Variant report

Variant	rs6941069
Chromosome Location	chr6:70628258-70628259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16868383	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4457128	1.00[MEX][hapmap]
rs6900991	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs6918912	1.00[MEX][hapmap]
rs6926567	1.00[MEX][hapmap]
rs7748877	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761638	1.00[MEX][hapmap]
rs9454898	1.00[MEX][hapmap]
rs9454927	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454929	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs957316	0.85[YRI][hapmap]
rs9689515	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs991974	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv463151	chr6:70625166-70694162	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603636	chr6:70625166-70694162	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70622600-70630000	Weak transcription	GM12878-XiMat	blood
2	chr6:70624200-70629000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:70625600-70642200	Weak transcription	Fetal Heart	heart
4	chr6:70627200-70628400	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr6:70627200-70629200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:70627200-70629200	Enhancers	NHDF-Ad	bronchial
7	chr6:70627400-70628400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:70627400-70629000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:70627400-70629200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:70627400-70629200	Enhancers	HMEC	breast
11	chr6:70627400-70629400	Enhancers	NHEK	skin
12	chr6:70627800-70628400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:70627800-70628400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:70627800-70628600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:70627800-70629000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:70627800-70629000	Enhancers	NH-A	brain
17	chr6:70627800-70629200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:70627800-70629200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:70628000-70632600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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