Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70518586..70520733-chr6:70520747..70522379,2	MCF-7	breast:
2	chr6:70505336..70508739-chr6:70519126..70521548,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168216	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11969169	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2445966	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2445967	1.00[MEX][hapmap]
rs28645955	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3214020	1.00[MEX][hapmap]
rs4457128	1.00[MEX][hapmap]
rs57897217	1.00[EUR][1000 genomes]
rs58732922	1.00[EUR][1000 genomes]
rs59870841	1.00[EUR][1000 genomes]
rs60480225	1.00[EUR][1000 genomes]
rs61292877	1.00[EUR][1000 genomes]
rs6905740	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6911500	1.00[CEU][hapmap]
rs6918912	1.00[MEX][hapmap]
rs6920889	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6922402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926567	1.00[MEX][hapmap]
rs6937729	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941069	1.00[MEX][hapmap]
rs73469973	1.00[EUR][1000 genomes]
rs73471802	1.00[EUR][1000 genomes]
rs73481751	1.00[EUR][1000 genomes]
rs7761638	1.00[MEX][hapmap]
rs9446165	1.00[EUR][1000 genomes]
rs9454899	1.00[EUR][1000 genomes]
rs991974	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70507400-70521800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:70518200-70523600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:70518400-70520000	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:70519400-70520000	Enhancers	Primary B cells from cord blood	blood
5	chr6:70519600-70519800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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