Variant report

Variant	rs6920889
Chromosome Location	chr6:70512358-70512359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70508029..70509546-chr6:70511762..70513866,2	K562	blood:
2	chr6:70505386..70507604-chr6:70511690..70513538,3	K562	blood:

Variant related genes	Relation type
ENSG00000168216	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11962504	0.86[YRI][hapmap]
rs11965589	1.00[AMR][1000 genomes]
rs11966214	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs11966540	0.93[AMR][1000 genomes]
rs11967736	0.88[YRI][hapmap]
rs11968161	0.83[YRI][hapmap]
rs11969169	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11969223	0.82[YRI][hapmap]
rs11970647	0.81[YRI][hapmap];0.93[AMR][1000 genomes]
rs12111306	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1457495	0.83[YRI][hapmap]
rs1457496	0.83[YRI][hapmap]
rs1563611	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868135	0.83[YRI][hapmap]
rs1902651	0.82[AFR][1000 genomes]
rs1902652	0.84[YRI][hapmap];0.93[AMR][1000 genomes]
rs1902653	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2445961	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2445966	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2445967	0.82[YRI][hapmap]
rs2445969	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2502566	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2502567	0.84[YRI][hapmap]
rs2502568	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs28645955	1.00[EUR][1000 genomes]
rs3214020	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3778243	0.93[AMR][1000 genomes]
rs3799097	0.84[YRI][hapmap]
rs3928194	0.93[AMR][1000 genomes]
rs4457128	0.82[YRI][hapmap]
rs55823739	0.86[AFR][1000 genomes]
rs57897217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58614233	0.93[AMR][1000 genomes]
rs58732922	1.00[EUR][1000 genomes]
rs59256218	0.82[AFR][1000 genomes]
rs59870841	1.00[EUR][1000 genomes]
rs60480225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292877	1.00[EUR][1000 genomes]
rs61572016	0.93[AMR][1000 genomes]
rs6905740	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911500	1.00[CEU][hapmap]
rs6922402	1.00[EUR][1000 genomes]
rs6922658	0.84[YRI][hapmap];0.93[AMR][1000 genomes]
rs6924226	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924743	0.82[AFR][1000 genomes]
rs6934740	0.93[AMR][1000 genomes]
rs6936974	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs6937729	1.00[EUR][1000 genomes]
rs73469943	0.85[AMR][1000 genomes]
rs73469973	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73481751	1.00[EUR][1000 genomes]
rs73481772	0.81[AFR][1000 genomes]
rs73485522	0.82[AFR][1000 genomes]
rs73485542	0.82[AFR][1000 genomes]
rs73486032	0.93[AMR][1000 genomes]
rs7747688	0.84[YRI][hapmap]
rs7750707	0.83[YRI][hapmap]
rs7751578	0.81[YRI][hapmap]
rs7763293	0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs7763931	0.84[YRI][hapmap];0.93[AMR][1000 genomes]
rs9446165	1.00[EUR][1000 genomes]
rs9454898	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9454899	1.00[EUR][1000 genomes]
rs980587	0.86[YRI][hapmap]
rs991973	0.93[AMR][1000 genomes]
rs991974	0.82[YRI][hapmap];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70507200-70512800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:70507400-70519400	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70507400-70521800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:70511000-70513000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:70511000-70513200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:70511000-70513400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:70511400-70513400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:70511600-70513000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:70511600-70513000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:70511600-70513400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:70511800-70512400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:70512200-70513000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:70512200-70513200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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