Variant report

Variant	rs59870841
Chromosome Location	chr6:70736213-70736214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11969169	1.00[EUR][1000 genomes]
rs28645955	1.00[EUR][1000 genomes]
rs36043258	1.00[AMR][1000 genomes]
rs57897217	1.00[EUR][1000 genomes]
rs60480225	1.00[EUR][1000 genomes]
rs61292877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61743753	1.00[AMR][1000 genomes]
rs6905740	1.00[EUR][1000 genomes]
rs6920889	1.00[EUR][1000 genomes]
rs6922402	1.00[EUR][1000 genomes]
rs6930479	1.00[AMR][1000 genomes]
rs6937501	1.00[AMR][1000 genomes]
rs6937729	1.00[EUR][1000 genomes]
rs73469973	1.00[EUR][1000 genomes]
rs73471788	1.00[AMR][1000 genomes]
rs73471802	1.00[EUR][1000 genomes]
rs9446165	1.00[EUR][1000 genomes]
rs9454898	1.00[EUR][1000 genomes]
rs9454899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026836	chr6:70727747-70849014	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv525985	chr6:70728202-70766504	Strong transcription Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70733000-70748600	Weak transcription	GM12878-XiMat	blood
2	chr6:70733400-70737000	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:70735600-70737800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:70736200-70736400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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