Variant report

Variant	rs11969169
Chromosome Location	chr6:70513456-70513457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70508029..70509546-chr6:70511762..70513866,2	K562	blood:
2	chr6:70505386..70507604-chr6:70511690..70513538,3	K562	blood:

Variant related genes	Relation type
ENSG00000168216	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11962504	0.83[YRI][hapmap]
rs11965589	1.00[AMR][1000 genomes]
rs11966214	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs11966540	0.93[AMR][1000 genomes]
rs11970647	0.93[AMR][1000 genomes]
rs12111306	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs1563611	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1902651	0.82[AFR][1000 genomes]
rs1902652	0.93[AMR][1000 genomes]
rs1902653	0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2445961	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs2445966	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2445969	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs2502566	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs2502568	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs28645955	1.00[EUR][1000 genomes]
rs3214020	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs3778243	0.93[AMR][1000 genomes]
rs3928194	0.93[AMR][1000 genomes]
rs55823739	0.86[AFR][1000 genomes]
rs57897217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58614233	0.93[AMR][1000 genomes]
rs58732922	1.00[EUR][1000 genomes]
rs59256218	0.82[AFR][1000 genomes]
rs59870841	1.00[EUR][1000 genomes]
rs60480225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292877	1.00[EUR][1000 genomes]
rs61572016	0.93[AMR][1000 genomes]
rs6905740	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911500	1.00[CEU][hapmap]
rs6920889	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6922402	1.00[EUR][1000 genomes]
rs6922658	0.93[AMR][1000 genomes]
rs6924226	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924743	0.82[AFR][1000 genomes]
rs6934740	0.93[AMR][1000 genomes]
rs6936974	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs6937729	1.00[EUR][1000 genomes]
rs73469943	0.85[AMR][1000 genomes]
rs73469973	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73481751	1.00[EUR][1000 genomes]
rs73481772	0.81[AFR][1000 genomes]
rs73485522	0.82[AFR][1000 genomes]
rs73485542	0.82[AFR][1000 genomes]
rs73486032	0.93[AMR][1000 genomes]
rs7763293	0.85[AMR][1000 genomes]
rs7763931	0.93[AMR][1000 genomes]
rs9446165	1.00[EUR][1000 genomes]
rs9454898	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9454899	1.00[EUR][1000 genomes]
rs991973	0.93[AMR][1000 genomes]
rs991974	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70507400-70519400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:70507400-70521800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:70512800-70513600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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