Variant report

Variant	rs9454899
Chromosome Location	chr6:70529231-70529232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11969169	1.00[EUR][1000 genomes]
rs2445966	1.00[EUR][1000 genomes]
rs28645955	1.00[EUR][1000 genomes]
rs57897217	1.00[EUR][1000 genomes]
rs58732922	1.00[EUR][1000 genomes]
rs59870841	1.00[EUR][1000 genomes]
rs60480225	1.00[EUR][1000 genomes]
rs61292877	1.00[EUR][1000 genomes]
rs6905740	1.00[EUR][1000 genomes]
rs6920889	1.00[EUR][1000 genomes]
rs6922402	1.00[EUR][1000 genomes]
rs6937729	1.00[EUR][1000 genomes]
rs73469973	1.00[EUR][1000 genomes]
rs73471802	1.00[EUR][1000 genomes]
rs73481751	1.00[EUR][1000 genomes]
rs9446165	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9454898	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70527200-70536000	Weak transcription	Primary B cells from cord blood	blood
2	chr6:70527600-70529400	Enhancers	Liver	Liver
3	chr6:70528600-70530000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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