Variant report

Variant	rs28645955
Chromosome Location	chr6:70523818-70523819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11969169	1.00[EUR][1000 genomes]
rs2445966	1.00[EUR][1000 genomes]
rs57897217	1.00[EUR][1000 genomes]
rs58732922	1.00[EUR][1000 genomes]
rs59870841	1.00[EUR][1000 genomes]
rs60480225	1.00[EUR][1000 genomes]
rs61292877	1.00[EUR][1000 genomes]
rs6905740	1.00[EUR][1000 genomes]
rs6920889	1.00[EUR][1000 genomes]
rs6922402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73469973	1.00[EUR][1000 genomes]
rs73471802	1.00[EUR][1000 genomes]
rs73481751	1.00[EUR][1000 genomes]
rs9446165	1.00[EUR][1000 genomes]
rs9454898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70520800-70524000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr6:70521800-70526800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:70521800-70526800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:70522000-70525400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:70522000-70525800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:70522200-70524200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:70522200-70525600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr6:70522200-70525800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:70522200-70526000	Enhancers	Primary T cells from cord blood	blood
10	chr6:70522400-70525000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:70522600-70524000	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:70522600-70524000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:70522600-70524200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:70522600-70526000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:70522800-70524000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr6:70522800-70524000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:70522800-70524000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:70522800-70527000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:70523000-70524000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:70523000-70524000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr6:70523000-70524000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:70523000-70524000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:70523000-70524200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:70523000-70524200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr6:70523000-70524200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:70523000-70524200	Enhancers	Fetal Thymus	thymus
27	chr6:70523000-70525200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:70523200-70524000	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:70523200-70524200	Enhancers	K562	blood
30	chr6:70523200-70526800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:70523400-70524000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:70523400-70524000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:70523400-70524200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:70523400-70528200	Weak transcription	Pancreas	Pancrea
35	chr6:70523600-70524000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr6:70523600-70524000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:70523600-70524000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr6:70523600-70524000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:70523600-70524000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr6:70523600-70524000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:70523600-70524000	Enhancers	Brain Hippocampus Middle	brain
42	chr6:70523600-70524200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:70523600-70524200	Flanking Active TSS	GM12878-XiMat	blood
44	chr6:70523800-70524000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:70523800-70524000	Enhancers	H9 Cell Line	embryonic stem cell
46	chr6:70523800-70524000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:70523800-70524000	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr6:70523800-70525000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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