Variant report

Variant	rs6936974
Chromosome Location	chr6:70510351-70510352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70506371..70508724-chr6:70509403..70511507,3	K562	blood:

Variant related genes	Relation type
ENSG00000168216	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10498869	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs11969169	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs12111306	0.83[YRI][hapmap]
rs13437057	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457498	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563611	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs16868113	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16868129	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17503698	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs1902653	0.82[YRI][hapmap]
rs2445961	0.84[YRI][hapmap]
rs2445969	0.84[YRI][hapmap]
rs2502566	0.84[YRI][hapmap]
rs2502568	0.84[YRI][hapmap]
rs28434733	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3214020	0.82[YRI][hapmap]
rs3799109	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707324	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707375	0.97[ASN][1000 genomes]
rs57897217	0.89[AFR][1000 genomes]
rs60480225	0.89[AFR][1000 genomes]
rs6905740	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs6920889	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs6924226	0.83[AFR][1000 genomes]
rs73469973	0.90[AFR][1000 genomes]
rs73471802	0.89[AFR][1000 genomes]
rs9294846	0.88[ASN][1000 genomes]
rs9294847	0.88[ASN][1000 genomes]
rs9294849	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446157	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446159	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446161	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454865	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9454868	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454873	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454876	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs9454880	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454881	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454887	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454889	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454890	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454892	0.88[EUR][1000 genomes]
rs9454893	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70507200-70512800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:70507400-70511000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:70507400-70511000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:70507400-70511000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:70507400-70511000	Weak transcription	Fetal Thymus	thymus
6	chr6:70507400-70511400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:70507400-70511600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:70507400-70511600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:70507400-70511600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:70507400-70512200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:70507400-70519400	Weak transcription	Primary B cells from cord blood	blood
12	chr6:70507400-70521800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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