Variant report

Variant	rs16868113
Chromosome Location	chr6:70447243-70447244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10498869	0.96[EUR][1000 genomes]
rs13437057	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1457498	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16868129	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503698	0.96[EUR][1000 genomes]
rs28434733	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799109	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707324	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707375	0.90[ASN][1000 genomes]
rs6936974	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294846	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294847	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294849	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446157	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446159	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446161	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454865	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454868	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454873	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9454880	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454881	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454887	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454889	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454890	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454892	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9454893	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:70380800-70467800	Weak transcription	K562	blood
3	chr6:70404200-70447400	Weak transcription	Hela-S3	cervix
4	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:70406600-70449400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:70406600-70457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:70417400-70455600	Weak transcription	Fetal Kidney	kidney
8	chr6:70418600-70455800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:70426200-70455800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:70429000-70455600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:70429000-70462400	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:70429000-70467600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:70431400-70498600	Weak transcription	Ovary	ovary
14	chr6:70431600-70456000	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:70431800-70450000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:70431800-70455800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:70431800-70456200	Weak transcription	Thymus	Thymus
18	chr6:70432000-70447800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:70432000-70447800	Weak transcription	Fetal Thymus	thymus
20	chr6:70432000-70455600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:70432000-70455800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:70432000-70455800	Weak transcription	Fetal Intestine Small	intestine
23	chr6:70432000-70456000	Weak transcription	Esophagus	oesophagus
24	chr6:70432000-70456200	Weak transcription	Aorta	Aorta
25	chr6:70432000-70468200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:70432000-70470400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:70432000-70470400	Weak transcription	Gastric	stomach
28	chr6:70432000-70479800	Weak transcription	Pancreas	Pancrea
29	chr6:70432200-70450200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:70432200-70480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:70432600-70461600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr6:70435600-70448000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:70435800-70447400	Weak transcription	HSMMtube	muscle
34	chr6:70435800-70455800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:70435800-70456000	Weak transcription	Brain Substantia Nigra	brain
36	chr6:70435800-70498800	Weak transcription	Adipose Nuclei	Adipose
37	chr6:70436000-70455600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:70436000-70455800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:70436000-70456000	Weak transcription	Brain Angular Gyrus	brain
40	chr6:70436000-70457200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:70436200-70449800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:70436200-70455600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:70437000-70455400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:70437000-70455400	Weak transcription	Left Ventricle	heart
45	chr6:70441200-70463400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:70442400-70455600	Weak transcription	Fetal Stomach	stomach
47	chr6:70442400-70498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:70442400-70498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:70443000-70468000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:70443200-70448600	Strong transcription	Primary B cells from cord blood	blood

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