Variant report

Variant	rs9294846
Chromosome Location	chr6:70379990-70379991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70377788..70380653-chr6:70882323..70884515,2	K562	blood:
2	chr6:70378773..70380366-chr6:70383381..70386352,2	K562	blood:
3	chr6:70378299..70380023-chr6:70421713..70423506,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10498869	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13437057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1457498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16868113	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16868129	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17503698	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28434733	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707375	0.84[ASN][1000 genomes]
rs6936974	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs9294847	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446157	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446159	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9446161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9454865	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9454880	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454881	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454887	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9454889	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9454890	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9454892	0.87[CEU][hapmap]
rs9454893	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70374000-70380600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:70374200-70382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70374200-70383200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:70375800-70381800	Weak transcription	GM12878-XiMat	blood
5	chr6:70376400-70382600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:70376600-70380200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:70376800-70382400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:70377200-70380800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:70377600-70382400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:70377600-70392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:70377800-70380000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:70378200-70380000	Weak transcription	Liver	Liver
13	chr6:70378400-70380000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:70378400-70380200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:70378400-70380200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:70378400-70381600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:70378400-70382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:70378400-70383200	Weak transcription	Aorta	Aorta
19	chr6:70378400-70388000	Weak transcription	Esophagus	oesophagus
20	chr6:70378400-70392600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:70378600-70380200	Weak transcription	Fetal Thymus	thymus
22	chr6:70378600-70380600	Weak transcription	Primary T cells from cord blood	blood
23	chr6:70378600-70380600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:70378600-70383600	Weak transcription	Brain Anterior Caudate	brain
25	chr6:70378600-70384000	Weak transcription	Placenta	Placenta
26	chr6:70378600-70384200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:70378800-70381200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:70378800-70381400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:70378800-70381400	Weak transcription	Adipose Nuclei	Adipose
30	chr6:70378800-70381600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:70378800-70381600	Weak transcription	Fetal Intestine Large	intestine
32	chr6:70378800-70382000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:70378800-70382000	Weak transcription	Fetal Lung	lung
34	chr6:70378800-70382200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:70378800-70382200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:70378800-70383200	Weak transcription	Lung	lung
37	chr6:70378800-70385400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:70378800-70386200	Weak transcription	Right Ventricle	heart
39	chr6:70378800-70388000	Weak transcription	Fetal Brain Female	brain
40	chr6:70378800-70388400	Weak transcription	Colonic Mucosa	Colon
41	chr6:70378800-70407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:70378800-70409600	Weak transcription	Brain Substantia Nigra	brain
43	chr6:70378800-70416800	Weak transcription	Fetal Kidney	kidney
44	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
45	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
46	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
47	chr6:70379000-70381600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:70379000-70383400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:70379000-70383600	Weak transcription	HSMMtube	muscle
50	chr6:70379000-70428400	Weak transcription	Ovary	ovary

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