Variant report

Variant	rs9454887
Chromosome Location	chr6:70468791-70468792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70467419..70470770-chr6:70504221..70506205,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10498869	0.98[EUR][1000 genomes]
rs13437057	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457498	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868113	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16868129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17503698	0.91[EUR][1000 genomes]
rs28434733	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799109	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707324	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4707375	0.97[ASN][1000 genomes]
rs6936974	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294846	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9294847	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9294849	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446157	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9446159	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446161	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454865	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9454868	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454873	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454876	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9454880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454890	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454892	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9454893	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70431400-70498600	Weak transcription	Ovary	ovary
2	chr6:70432000-70470400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:70432000-70470400	Weak transcription	Gastric	stomach
4	chr6:70432000-70479800	Weak transcription	Pancreas	Pancrea
5	chr6:70432200-70480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:70435800-70498800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:70442400-70498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:70442400-70498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:70446000-70470400	Weak transcription	Psoas Muscle	Psoas
10	chr6:70447800-70498400	Weak transcription	Placenta	Placenta
11	chr6:70448400-70470600	Weak transcription	Right Ventricle	heart
12	chr6:70448800-70489800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:70450600-70472000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:70450800-70487600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:70453800-70505600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:70456400-70483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:70456600-70471600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:70456600-70491000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:70456800-70470600	Weak transcription	Left Ventricle	heart
20	chr6:70456800-70473400	Weak transcription	Aorta	Aorta
21	chr6:70457200-70486800	Weak transcription	Thymus	Thymus
22	chr6:70457200-70489800	Weak transcription	Esophagus	oesophagus
23	chr6:70457200-70494800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:70457400-70485000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:70457400-70489800	Weak transcription	Dnd41	blood
26	chr6:70457600-70473800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:70457600-70484600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:70457600-70487400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:70458200-70472400	Weak transcription	Fetal Thymus	thymus
30	chr6:70459000-70470000	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:70459400-70474000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:70459600-70477200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:70461200-70468800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:70461800-70480600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr6:70463000-70492400	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:70463800-70473800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:70463800-70479800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:70466200-70479800	Weak transcription	Fetal Stomach	stomach
39	chr6:70466400-70487000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:70466600-70468800	ZNF genes & repeats	GM12878-XiMat	blood
41	chr6:70467000-70480000	Weak transcription	Primary T cells from cord blood	blood
42	chr6:70467200-70470400	Weak transcription	Primary B cells from cord blood	blood
43	chr6:70467200-70472400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:70467200-70473400	Weak transcription	Fetal Intestine Small	intestine
45	chr6:70467200-70481000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:70467600-70469000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:70467800-70468800	Enhancers	K562	blood
48	chr6:70468000-70469000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr6:70468000-70469000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr6:70468000-70469000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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