Variant report

Variant	rs11966214
Chromosome Location	chr6:70427922-70427923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11962504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964740	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11965589	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11966540	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967076	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11967207	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11967736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969169	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs11969223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969244	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379454	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1457496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1563611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867900	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868135	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445965	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502556	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2502557	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502565	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2502566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3214020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778243	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3928194	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55823739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56310174	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57751010	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57897217	0.82[AFR][1000 genomes]
rs58614233	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59256218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59573217	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59727335	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60078953	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60480225	0.82[AFR][1000 genomes]
rs61572016	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903952	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905740	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs6912049	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920889	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs6922658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924226	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6924743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934740	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73469943	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73469973	0.83[AFR][1000 genomes]
rs73471802	0.82[AFR][1000 genomes]
rs73481734	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481772	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485519	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485538	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486009	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486032	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73745767	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7740306	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7750707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7758646	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7763293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991973	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
2	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
3	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
4	chr6:70379000-70428400	Weak transcription	Ovary	ovary
5	chr6:70379000-70435400	Weak transcription	Fetal Brain Male	brain
6	chr6:70379600-70431000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:70380400-70430600	Weak transcription	Fetal Intestine Small	intestine
8	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:70380800-70467800	Weak transcription	K562	blood
10	chr6:70382200-70435400	Weak transcription	Brain Angular Gyrus	brain
11	chr6:70382400-70430200	Weak transcription	Small Intestine	intestine
12	chr6:70383800-70431000	Weak transcription	Lung	lung
13	chr6:70384200-70428400	Weak transcription	Aorta	Aorta
14	chr6:70384200-70431000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:70397800-70439000	Weak transcription	Fetal Heart	heart
16	chr6:70400800-70430800	Weak transcription	Pancreas	Pancrea
17	chr6:70402000-70430800	Weak transcription	Esophagus	oesophagus
18	chr6:70402200-70435200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:70402800-70430800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:70403000-70429800	Weak transcription	NHDF-Ad	bronchial
21	chr6:70403400-70432200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:70404200-70447400	Weak transcription	Hela-S3	cervix
23	chr6:70404600-70433800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:70405000-70432200	Weak transcription	Fetal Brain Female	brain
25	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:70405400-70434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:70405600-70446400	Weak transcription	HepG2	liver
28	chr6:70406000-70430800	Weak transcription	Thymus	Thymus
29	chr6:70406000-70433600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:70406200-70438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:70406600-70431200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:70406600-70449400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:70406600-70457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:70408000-70430200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:70408400-70428200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:70408400-70431200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:70408400-70434400	Weak transcription	Brain Germinal Matrix	brain
38	chr6:70410000-70430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:70410000-70435400	Weak transcription	Brain Substantia Nigra	brain
40	chr6:70413000-70435600	Weak transcription	HSMMtube	muscle
41	chr6:70413800-70429200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr6:70414200-70431000	Weak transcription	Gastric	stomach
43	chr6:70414200-70433000	Weak transcription	Right Ventricle	heart
44	chr6:70414800-70430400	Weak transcription	NH-A	brain
45	chr6:70416800-70431400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:70417200-70428200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:70417400-70431400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:70417400-70455600	Weak transcription	Fetal Kidney	kidney
49	chr6:70417600-70430600	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:70417800-70428200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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