Variant report

Variant	rs73745767
Chromosome Location	chr6:70450930-70450931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11962504	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11965589	0.89[ASN][1000 genomes]
rs11966214	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11966540	0.89[ASN][1000 genomes]
rs11967076	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11967736	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11969223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11969244	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11970647	0.89[ASN][1000 genomes]
rs12111306	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1379454	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1457495	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1457496	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1563611	0.86[ASN][1000 genomes]
rs16867900	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16868135	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1902651	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1902652	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1902653	0.89[ASN][1000 genomes]
rs2445961	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445965	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445967	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445969	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2502556	0.89[ASN][1000 genomes]
rs2502557	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2502565	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2502566	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2502567	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2502568	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3214020	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778243	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3799097	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3928194	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4457128	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs55823739	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56310174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57751010	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58614233	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59256218	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59573217	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59727335	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs60078953	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61572016	0.89[ASN][1000 genomes]
rs6903952	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6912049	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6922658	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6924226	0.86[ASN][1000 genomes]
rs6924743	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6934740	0.89[ASN][1000 genomes]
rs73469943	0.89[ASN][1000 genomes]
rs73481734	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73481772	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73485519	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73485522	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73485538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73485542	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73485549	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73486009	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73486032	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7740306	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7747688	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7750707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7751578	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763293	0.89[ASN][1000 genomes]
rs7763931	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs980587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs991973	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs991974	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv819863	chr6:70448447-70457777	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:70380800-70467800	Weak transcription	K562	blood
3	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:70406600-70457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:70417400-70455600	Weak transcription	Fetal Kidney	kidney
6	chr6:70418600-70455800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:70426200-70455800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:70429000-70455600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:70429000-70462400	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:70429000-70467600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:70431400-70498600	Weak transcription	Ovary	ovary
12	chr6:70431600-70456000	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:70431800-70455800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:70431800-70456200	Weak transcription	Thymus	Thymus
15	chr6:70432000-70455600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:70432000-70455800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:70432000-70455800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:70432000-70456000	Weak transcription	Esophagus	oesophagus
19	chr6:70432000-70456200	Weak transcription	Aorta	Aorta
20	chr6:70432000-70468200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:70432000-70470400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:70432000-70470400	Weak transcription	Gastric	stomach
23	chr6:70432000-70479800	Weak transcription	Pancreas	Pancrea
24	chr6:70432200-70480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:70432600-70461600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:70435800-70455800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:70435800-70456000	Weak transcription	Brain Substantia Nigra	brain
28	chr6:70435800-70498800	Weak transcription	Adipose Nuclei	Adipose
29	chr6:70436000-70455600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:70436000-70455800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:70436000-70456000	Weak transcription	Brain Angular Gyrus	brain
32	chr6:70436000-70457200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:70436200-70455600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:70437000-70455400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:70437000-70455400	Weak transcription	Left Ventricle	heart
36	chr6:70441200-70463400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:70442400-70455600	Weak transcription	Fetal Stomach	stomach
38	chr6:70442400-70498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:70442400-70498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:70443000-70468000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:70443400-70456200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:70443600-70452000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr6:70444000-70452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:70444800-70451400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:70444800-70455600	Weak transcription	Fetal Brain Female	brain
46	chr6:70444800-70461000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:70445000-70458400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:70445200-70451800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:70445200-70455600	Weak transcription	Fetal Lung	lung
50	chr6:70445200-70455800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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