Variant report

Variant	rs6903952
Chromosome Location	chr6:70382570-70382571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11962504	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964740	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11965589	1.00[ASN][1000 genomes]
rs11966214	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966540	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967076	1.00[ASN][1000 genomes]
rs11967207	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11967736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968161	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969223	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969244	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970647	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111306	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379454	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457495	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1457496	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1563611	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902651	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902652	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902653	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445961	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445969	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502556	1.00[ASN][1000 genomes]
rs2502557	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502565	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2502566	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502568	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3214020	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778243	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3928194	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457128	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55823739	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56310174	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57751010	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58614233	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59256218	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59573217	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59727335	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60078953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61572016	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922658	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924226	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6924743	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934740	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73469943	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481772	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485522	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485538	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485542	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485549	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486009	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486032	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73745767	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7740306	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747688	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7750707	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751578	1.00[ASN][1000 genomes]
rs7758646	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7763293	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763931	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980587	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991973	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991974	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70374200-70383200	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:70376400-70382600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:70377600-70392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:70378400-70383200	Weak transcription	Aorta	Aorta
5	chr6:70378400-70388000	Weak transcription	Esophagus	oesophagus
6	chr6:70378400-70392600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:70378600-70383600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:70378600-70384000	Weak transcription	Placenta	Placenta
9	chr6:70378600-70384200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:70378800-70383200	Weak transcription	Lung	lung
11	chr6:70378800-70385400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:70378800-70386200	Weak transcription	Right Ventricle	heart
13	chr6:70378800-70388000	Weak transcription	Fetal Brain Female	brain
14	chr6:70378800-70388400	Weak transcription	Colonic Mucosa	Colon
15	chr6:70378800-70407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:70378800-70409600	Weak transcription	Brain Substantia Nigra	brain
17	chr6:70378800-70416800	Weak transcription	Fetal Kidney	kidney
18	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
19	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
20	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
21	chr6:70379000-70383400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:70379000-70383600	Weak transcription	HSMMtube	muscle
23	chr6:70379000-70428400	Weak transcription	Ovary	ovary
24	chr6:70379000-70435400	Weak transcription	Fetal Brain Male	brain
25	chr6:70379200-70390200	Weak transcription	HSMM	muscle
26	chr6:70379400-70382600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:70379600-70431000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:70380000-70383600	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:70380000-70387200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:70380000-70387400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr6:70380000-70387600	Strong transcription	Liver	Liver
32	chr6:70380000-70390600	Weak transcription	Thymus	Thymus
33	chr6:70380000-70390800	Weak transcription	Pancreas	Pancrea
34	chr6:70380200-70382800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:70380200-70384600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr6:70380200-70387400	Strong transcription	Fetal Thymus	thymus
37	chr6:70380200-70391000	Strong transcription	Primary B cells from cord blood	blood
38	chr6:70380200-70392800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:70380200-70407600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:70380400-70385400	Weak transcription	Gastric	stomach
41	chr6:70380400-70390800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:70380400-70430600	Weak transcription	Fetal Intestine Small	intestine
43	chr6:70380600-70386600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:70380800-70388000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:70380800-70402800	Weak transcription	NHDF-Ad	bronchial
47	chr6:70380800-70467800	Weak transcription	K562	blood
48	chr6:70381000-70383000	Weak transcription	Brain Germinal Matrix	brain
49	chr6:70381000-70383400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:70381000-70384200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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