Variant report

Variant	rs11964740
Chromosome Location	chr6:70376013-70376014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11962504	0.89[YRI][hapmap]
rs11965589	0.80[AFR][1000 genomes]
rs11966214	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11967207	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967736	0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11968161	0.86[YRI][hapmap]
rs11969169	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs11969223	0.85[YRI][hapmap]
rs11969244	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12111306	0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1379454	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1457495	0.86[YRI][hapmap]
rs1457496	0.86[YRI][hapmap]
rs1563611	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs16867832	1.00[EUR][1000 genomes]
rs16867900	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16868135	0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1902651	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1902652	0.87[YRI][hapmap]
rs1902653	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs2445961	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2445965	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2445966	1.00[CEU][hapmap]
rs2445967	0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2445969	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2502556	0.86[AFR][1000 genomes]
rs2502566	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2502567	0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2502568	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28756753	1.00[EUR][1000 genomes]
rs3214020	0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs3799097	0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4457128	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs55823739	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57751010	0.81[AFR][1000 genomes]
rs59256218	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs59573217	0.80[AFR][1000 genomes]
rs59727335	0.80[AFR][1000 genomes]
rs60078953	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6903952	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6905740	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs6909705	1.00[EUR][1000 genomes]
rs6911500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6912049	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6920889	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs6922658	0.87[YRI][hapmap]
rs6924226	0.88[AFR][1000 genomes]
rs6924743	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6934036	1.00[EUR][1000 genomes]
rs73481734	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73481772	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73485519	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73485522	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73485538	0.81[AFR][1000 genomes]
rs73485542	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73485549	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7747688	0.87[YRI][hapmap]
rs7750707	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs7751578	0.84[YRI][hapmap]
rs7758646	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7763931	0.87[YRI][hapmap]
rs7768139	1.00[EUR][1000 genomes]
rs9454898	1.00[CEU][hapmap]
rs980587	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs991974	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70374000-70380600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:70374200-70382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70374200-70383200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:70375200-70376400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:70375800-70381800	Weak transcription	GM12878-XiMat	blood

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