Variant report

Variant	rs7758646
Chromosome Location	chr6:70374687-70374688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70360089..70362323-chr6:70373948..70375891,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11964740	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11965589	0.80[AFR][1000 genomes]
rs11966214	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11967207	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11967736	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11969244	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12111306	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1379454	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1563611	0.85[AFR][1000 genomes]
rs16867900	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16867995	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16868038	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16868102	1.00[JPT][hapmap]
rs16868111	1.00[JPT][hapmap]
rs16868135	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1902651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1902653	0.87[AFR][1000 genomes]
rs2445961	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2445965	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2445967	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2445969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2502556	0.86[AFR][1000 genomes]
rs2502566	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2502567	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2502568	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3214020	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3799097	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4457128	0.80[AFR][1000 genomes]
rs55823739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57751010	0.81[AFR][1000 genomes]
rs59256218	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59573217	0.80[AFR][1000 genomes]
rs59727335	0.80[AFR][1000 genomes]
rs60078953	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6903952	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6912049	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6924226	0.87[AFR][1000 genomes]
rs6924743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73481734	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73481772	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485519	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73485522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485538	0.81[AFR][1000 genomes]
rs73485542	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750707	0.81[AFR][1000 genomes]
rs980587	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70374000-70380600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:70374200-70382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70374200-70383200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:70374600-70375800	Enhancers	GM12878-XiMat	blood

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