Variant report

Variant	rs7747688
Chromosome Location	chr6:70467829-70467830
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70465920..70468544-chr6:70470471..70472338,2	MCF-7	breast:
2	chr6:70461923..70464726-chr6:70466423..70468555,2	MCF-7	breast:
3	chr6:70467419..70470770-chr6:70504221..70506205,3	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11962504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11965589	1.00[ASN][1000 genomes]
rs11966214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11966540	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11967076	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11968161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11969223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11969244	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11970647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12111306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1379454	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1457495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1563611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs16867900	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16868135	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1902651	1.00[ASN][1000 genomes]
rs1902652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1902653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2445961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2445965	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2445967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2445969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2502556	1.00[ASN][1000 genomes]
rs2502557	1.00[ASN][1000 genomes]
rs2502565	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2502566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2502567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2502568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3214020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3778243	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3799097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3928194	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4457128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55823739	1.00[ASN][1000 genomes]
rs56310174	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57751010	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58614233	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59256218	1.00[ASN][1000 genomes]
rs59573217	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59727335	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60078953	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61572016	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6903952	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6912049	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6920889	0.84[YRI][hapmap]
rs6922658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6924226	0.96[ASN][1000 genomes]
rs6924743	1.00[ASN][1000 genomes]
rs6934740	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73469943	1.00[ASN][1000 genomes]
rs73481734	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73481772	1.00[ASN][1000 genomes]
rs73485519	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73485522	1.00[ASN][1000 genomes]
rs73485538	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73485542	1.00[ASN][1000 genomes]
rs73485549	1.00[ASN][1000 genomes]
rs73486009	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73486032	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73745767	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7740306	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7750707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7751578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7763931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs980587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs991973	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs991974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:70431400-70498600	Weak transcription	Ovary	ovary
3	chr6:70432000-70468200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:70432000-70470400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:70432000-70470400	Weak transcription	Gastric	stomach
6	chr6:70432000-70479800	Weak transcription	Pancreas	Pancrea
7	chr6:70432200-70480000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:70435800-70498800	Weak transcription	Adipose Nuclei	Adipose
9	chr6:70442400-70498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:70442400-70498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:70443000-70468000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:70446000-70470400	Weak transcription	Psoas Muscle	Psoas
13	chr6:70447800-70498400	Weak transcription	Placenta	Placenta
14	chr6:70448400-70470600	Weak transcription	Right Ventricle	heart
15	chr6:70448800-70489800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:70450600-70472000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:70450800-70487600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:70453800-70468600	Weak transcription	Small Intestine	intestine
19	chr6:70453800-70505600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:70456400-70483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:70456600-70471600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:70456600-70491000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:70456800-70468000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:70456800-70470600	Weak transcription	Left Ventricle	heart
25	chr6:70456800-70473400	Weak transcription	Aorta	Aorta
26	chr6:70457200-70468200	Weak transcription	Liver	Liver
27	chr6:70457200-70486800	Weak transcription	Thymus	Thymus
28	chr6:70457200-70489800	Weak transcription	Esophagus	oesophagus
29	chr6:70457200-70494800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:70457400-70485000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:70457400-70489800	Weak transcription	Dnd41	blood
32	chr6:70457600-70473800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:70457600-70484600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:70457600-70487400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:70458200-70472400	Weak transcription	Fetal Thymus	thymus
36	chr6:70459000-70470000	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:70459400-70474000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:70459600-70477200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:70461200-70468800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:70461600-70468600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:70461800-70480600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:70463000-70492400	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:70463600-70468200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:70463800-70473800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:70463800-70479800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:70465400-70468000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:70466200-70479800	Weak transcription	Fetal Stomach	stomach
48	chr6:70466400-70468200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:70466400-70487000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:70466600-70468200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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