Variant report

Variant	rs11967076
Chromosome Location	chr6:70495372-70495373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70488028..70491551-chr6:70493595..70496779,4	K562	blood:
2	chr6:70491992..70496576-chr6:70504929..70507216,4	MCF-7	breast:
3	chr6:70493722..70496441-chr6:70496878..70499426,2	K562	blood:
4	chr6:70492141..70498273-chr6:70502800..70508075,8	K562	blood:

Variant related genes	Relation type
ENSG00000168216	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11962504	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965589	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966214	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11966540	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967736	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11968161	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969223	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969244	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11970647	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111306	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1379454	1.00[ASN][1000 genomes]
rs1457495	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457496	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563611	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867900	1.00[ASN][1000 genomes]
rs16868135	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1902651	1.00[ASN][1000 genomes]
rs1902652	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902653	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445961	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2445965	1.00[ASN][1000 genomes]
rs2445967	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2445969	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2502556	1.00[ASN][1000 genomes]
rs2502557	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502565	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2502566	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2502567	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2502568	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3214020	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3778243	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799097	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3928194	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457128	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55823739	1.00[ASN][1000 genomes]
rs56310174	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57751010	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58614233	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59256218	1.00[ASN][1000 genomes]
rs59573217	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59727335	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60078953	1.00[ASN][1000 genomes]
rs61572016	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903952	1.00[ASN][1000 genomes]
rs6912049	1.00[ASN][1000 genomes]
rs6922658	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924226	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6924743	1.00[ASN][1000 genomes]
rs6934740	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73469943	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481734	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73481772	1.00[ASN][1000 genomes]
rs73485519	1.00[ASN][1000 genomes]
rs73485522	1.00[ASN][1000 genomes]
rs73485538	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485542	1.00[ASN][1000 genomes]
rs73485549	1.00[ASN][1000 genomes]
rs73486009	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73486032	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73745767	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7740306	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747688	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750707	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751578	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763293	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763931	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980587	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991973	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991974	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70431400-70498600	Weak transcription	Ovary	ovary
2	chr6:70435800-70498800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:70442400-70498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:70442400-70498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:70447800-70498400	Weak transcription	Placenta	Placenta
6	chr6:70453800-70505600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:70473000-70499000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:70477200-70505200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:70477600-70501600	Weak transcription	Fetal Kidney	kidney
10	chr6:70477600-70505400	Weak transcription	NHDF-Ad	bronchial
11	chr6:70478400-70505000	Weak transcription	Fetal Brain Male	brain
12	chr6:70478800-70498600	Weak transcription	HSMM	muscle
13	chr6:70479600-70500600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:70479800-70506200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:70480200-70506000	Weak transcription	Lung	lung
16	chr6:70481400-70498800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:70481400-70502200	Weak transcription	Spleen	Spleen
18	chr6:70481600-70501000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:70481600-70505000	Weak transcription	Aorta	Aorta
20	chr6:70483200-70499200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:70483200-70500800	Weak transcription	Fetal Brain Female	brain
22	chr6:70483400-70501200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:70484200-70498600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:70484200-70505200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:70485600-70498400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:70486400-70501000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:70486400-70501000	Weak transcription	Brain Angular Gyrus	brain
28	chr6:70486400-70501000	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:70486600-70500400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:70486600-70501000	Weak transcription	Brain Anterior Caudate	brain
31	chr6:70486600-70501000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:70486600-70501200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:70487200-70501800	Weak transcription	Thymus	Thymus
34	chr6:70487200-70505200	Weak transcription	NHLF	lung
35	chr6:70487800-70498600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:70488000-70505200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:70488600-70498400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:70488600-70501200	Weak transcription	Fetal Lung	lung
39	chr6:70490200-70498600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:70490200-70498600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:70490200-70501800	Weak transcription	Esophagus	oesophagus
42	chr6:70490200-70505600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:70490400-70498600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:70490400-70501200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:70490400-70505400	Weak transcription	Fetal Muscle Leg	muscle
46	chr6:70490600-70500200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:70490800-70498400	Weak transcription	Fetal Thymus	thymus
48	chr6:70490800-70498600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:70490800-70498600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:70490800-70498600	Weak transcription	Brain Substantia Nigra	brain

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