Variant report

Variant	rs73471788
Chromosome Location	chr6:70512263-70512264
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59870841	1.00[AMR][1000 genomes]
rs61292877	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70507200-70512800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:70507400-70519400	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70507400-70521800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:70511000-70513000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:70511000-70513200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:70511000-70513400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:70511400-70513400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:70511600-70513000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:70511600-70513000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:70511600-70513400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:70511800-70512400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:70512200-70513000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:70512200-70513200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links