Variant report

Variant	rs6901542
Chromosome Location	chr6:24387286-24387287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11961792	1.00[ASN][1000 genomes]
rs16889327	1.00[ASN][1000 genomes]
rs57012404	1.00[ASN][1000 genomes]
rs57186149	1.00[ASN][1000 genomes]
rs58495744	1.00[ASN][1000 genomes]
rs58658532	1.00[ASN][1000 genomes]
rs61153452	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907720	1.00[ASN][1000 genomes]
rs6910432	1.00[ASN][1000 genomes]
rs6917259	1.00[ASN][1000 genomes]
rs6924628	1.00[ASN][1000 genomes]
rs6925403	1.00[ASN][1000 genomes]
rs6933028	1.00[ASN][1000 genomes]
rs6938773	1.00[ASN][1000 genomes]
rs7749261	1.00[ASN][1000 genomes]
rs7759431	1.00[ASN][1000 genomes]
rs7769083	1.00[ASN][1000 genomes]
rs7770085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24386200-24388200	Weak transcription	A549	lung
2	chr6:24386400-24391200	Enhancers	HepG2	liver
3	chr6:24386800-24388600	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links