Variant report

Variant	rs7759431
Chromosome Location	chr6:24491001-24491002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24490344..24492283-chr6:24493726..24496491,4	MCF-7	breast:
2	chr6:24487096..24491354-chr6:24491448..24495730,8	K562	blood:
3	chr6:24488265..24492557-chr6:24493494..24498787,7	K562	blood:
4	chr6:24489101..24491684-chr6:24493403..24495493,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112293	Chromatin interaction
ENSG00000112294	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11961792	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967803	1.00[ASN][1000 genomes]
rs16889327	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889513	1.00[ASN][1000 genomes]
rs57012404	1.00[ASN][1000 genomes]
rs57186149	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58495744	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58658532	1.00[ASN][1000 genomes]
rs61153452	1.00[ASN][1000 genomes]
rs6901542	1.00[ASN][1000 genomes]
rs6907720	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910432	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917259	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924628	1.00[ASN][1000 genomes]
rs6925403	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933028	1.00[ASN][1000 genomes]
rs6938773	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749261	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7769083	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7770085	1.00[ASN][1000 genomes]
rs9467240	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv519552	chr6:24451256-24524704	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv883480	chr6:24481299-24507519	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:24458800-24492800	Weak transcription	Thymus	Thymus
3	chr6:24458800-24494000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:24470600-24494600	Weak transcription	Left Ventricle	heart
5	chr6:24473000-24494600	Weak transcription	Ovary	ovary
6	chr6:24480400-24493600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:24483800-24494000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:24485400-24494000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:24488000-24492000	Enhancers	Fetal Muscle Leg	muscle
10	chr6:24489000-24491600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:24489600-24492000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:24489800-24494600	Weak transcription	Right Atrium	heart
13	chr6:24490400-24492000	Enhancers	Fetal Muscle Trunk	muscle
14	chr6:24490400-24492200	Enhancers	Liver	Liver
15	chr6:24490400-24494400	Weak transcription	Right Ventricle	heart
16	chr6:24490400-24494600	Weak transcription	Fetal Intestine Small	intestine
17	chr6:24490600-24492200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:24490600-24493400	Weak transcription	Adipose Nuclei	Adipose
19	chr6:24490600-24493600	Weak transcription	HepG2	liver
20	chr6:24490600-24494400	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:24490600-24494400	Weak transcription	Hela-S3	cervix
22	chr6:24490800-24493800	Weak transcription	Brain Anterior Caudate	brain
23	chr6:24490800-24494200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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