Variant report

Variant	rs11967803
Chromosome Location	chr6:24583511-24583512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24583415..24585210-chr6:24588851..24590739,2	K562	blood:
2	chr6:24578480..24581116-chr6:24582256..24584782,2	MCF-7	breast:
3	chr6:24581924..24583883-chr6:24690538..24692523,2	MCF-7	breast:
4	chr6:24582804..24586516-chr6:24694820..24697864,3	MCF-7	breast:
5	chr6:24580547..24584375-chr6:24665231..24668702,6	MCF-7	breast:
6	chr6:24583421..24584285-chr6:24695932..24696466,3	K562	blood:
7	chr6:24581200..24583513-chr6:24694242..24695890,2	MCF-7	breast:
8	chr6:24583201..24584327-chr6:24695495..24696390,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112304	Chromatin interaction
ENSG00000111802	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11961792	1.00[ASN][1000 genomes]
rs16889327	1.00[ASN][1000 genomes]
rs16889513	1.00[ASN][1000 genomes]
rs1923190	1.00[ASN][1000 genomes]
rs57012404	1.00[ASN][1000 genomes]
rs57186149	1.00[ASN][1000 genomes]
rs58495744	1.00[ASN][1000 genomes]
rs58658532	1.00[ASN][1000 genomes]
rs6907720	1.00[ASN][1000 genomes]
rs6910432	1.00[ASN][1000 genomes]
rs6917259	1.00[ASN][1000 genomes]
rs6924628	1.00[ASN][1000 genomes]
rs6925403	1.00[ASN][1000 genomes]
rs6933028	1.00[ASN][1000 genomes]
rs6938773	1.00[ASN][1000 genomes]
rs7749261	1.00[ASN][1000 genomes]
rs7759431	1.00[ASN][1000 genomes]
rs7769083	1.00[ASN][1000 genomes]
rs9467240	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
2	chr6:24570200-24583600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:24572200-24584200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:24573600-24584000	Weak transcription	Fetal Brain Female	brain
5	chr6:24576800-24583600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:24581800-24586000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:24582000-24584000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:24582000-24584200	Weak transcription	Fetal Intestine Large	intestine
9	chr6:24583200-24583600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:24583200-24583600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:24583200-24583600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr6:24583200-24584600	Enhancers	Colon Smooth Muscle	Colon
13	chr6:24583200-24585000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:24583200-24585400	Enhancers	Fetal Heart	heart
15	chr6:24583200-24586800	Enhancers	Fetal Intestine Small	intestine
16	chr6:24583400-24583600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:24583400-24583600	Enhancers	Brain Anterior Caudate	brain
18	chr6:24583400-24583600	Enhancers	Right Atrium	heart
19	chr6:24583400-24583600	Enhancers	A549	lung
20	chr6:24583400-24583800	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:24583400-24583800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:24583400-24583800	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:24583400-24583800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:24583400-24583800	Flanking Active TSS	Hela-S3	cervix
25	chr6:24583400-24583800	Enhancers	HMEC	breast
26	chr6:24583400-24584000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:24583400-24584000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:24583400-24584000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:24583400-24584000	Active TSS	Rectal Smooth Muscle	rectum
30	chr6:24583400-24584200	Enhancers	Adipose Nuclei	Adipose
31	chr6:24583400-24584200	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr6:24583400-24584200	Enhancers	Fetal Lung	lung
33	chr6:24583400-24584200	Enhancers	Stomach Mucosa	stomach
34	chr6:24583400-24584400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:24583400-24584400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:24583400-24584400	Enhancers	Brain Angular Gyrus	brain
37	chr6:24583400-24584400	Enhancers	Brain Cingulate Gyrus	brain
38	chr6:24583400-24584400	Enhancers	Brain Germinal Matrix	brain
39	chr6:24583400-24584400	Enhancers	Brain Hippocampus Middle	brain
40	chr6:24583400-24584400	Enhancers	Brain Substantia Nigra	brain
41	chr6:24583400-24584400	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr6:24583400-24584400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr6:24583400-24584400	Bivalent Enhancer	HepG2	liver
44	chr6:24583400-24584600	Enhancers	HSMM	muscle
45	chr6:24583400-24584600	Enhancers	Osteobl	bone

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