Variant report

Variant	rs16889513
Chromosome Location	chr6:24608150-24608151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11961792	1.00[ASN][1000 genomes]
rs11967803	1.00[ASN][1000 genomes]
rs16889327	1.00[ASN][1000 genomes]
rs1923190	1.00[ASN][1000 genomes]
rs4298343	0.84[YRI][hapmap]
rs57012404	1.00[ASN][1000 genomes]
rs57186149	1.00[ASN][1000 genomes]
rs58495744	1.00[ASN][1000 genomes]
rs58658532	1.00[ASN][1000 genomes]
rs59166521	0.82[AFR][1000 genomes]
rs6907720	1.00[ASN][1000 genomes]
rs6910432	1.00[ASN][1000 genomes]
rs6917259	1.00[ASN][1000 genomes]
rs6924628	1.00[ASN][1000 genomes]
rs6925403	1.00[ASN][1000 genomes]
rs6933028	1.00[ASN][1000 genomes]
rs6938773	1.00[ASN][1000 genomes]
rs7749261	1.00[ASN][1000 genomes]
rs7759431	1.00[ASN][1000 genomes]
rs7769083	1.00[ASN][1000 genomes]
rs9356936	0.87[AFR][1000 genomes]
rs9467240	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24606600-24608200	Enhancers	Fetal Intestine Large	intestine
2	chr6:24607600-24608400	Enhancers	Fetal Brain Male	brain
3	chr6:24607800-24613400	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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