Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24604712..24607440-chr6:24620282..24623625,3	K562	blood:
2	chr6:24605172..24607164-chr6:24613229..24614959,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16889513	0.84[YRI][hapmap]
rs1772254	1.00[CEU][hapmap]
rs2073013	1.00[CEU][hapmap]
rs2760135	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2817201	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3212229	1.00[CEU][hapmap]
rs5026270	0.92[ASN][1000 genomes]
rs5026271	0.92[ASN][1000 genomes]
rs59166521	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60613681	0.92[ASN][1000 genomes]
rs6911855	0.94[ASN][1000 genomes]
rs6915373	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6939068	0.87[ASN][1000 genomes]
rs7743602	0.94[ASN][1000 genomes]
rs9356936	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9356944	1.00[CEU][hapmap]
rs9379670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9379672	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9379686	1.00[CEU][hapmap]
rs9393566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24601800-24607600	Weak transcription	Fetal Brain Female	brain
2	chr6:24606600-24607200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:24606600-24607400	Enhancers	Fetal Intestine Small	intestine
4	chr6:24606600-24608200	Enhancers	Fetal Intestine Large	intestine

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