Variant report

Variant	rs2760135
Chromosome Location	chr6:24585547-24585548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24583561..24585775-chr6:24695731..24698506,2	MCF-7	breast:
2	chr6:24582804..24586516-chr6:24694820..24697864,3	MCF-7	breast:
3	chr6:24524047..24526030-chr6:24583848..24585910,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2817201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4298343	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs59166521	0.85[ASN][1000 genomes]
rs9356936	0.83[ASN][1000 genomes]
rs9379670	0.85[ASN][1000 genomes]
rs9379672	0.80[ASN][1000 genomes]
rs9393566	0.91[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
2	chr6:24581800-24586000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:24583200-24586800	Enhancers	Fetal Intestine Small	intestine
4	chr6:24583600-24587200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:24583800-24585800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:24583800-24601200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:24583800-24606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:24584000-24585600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:24584000-24587200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:24584200-24585800	Enhancers	Fetal Intestine Large	intestine
11	chr6:24584200-24586600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:24584200-24600200	Weak transcription	A549	lung
13	chr6:24584400-24585600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:24584400-24585600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:24584400-24585600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:24584400-24590400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:24584400-24601200	Weak transcription	Brain Angular Gyrus	brain
18	chr6:24584600-24588200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:24584600-24588200	Weak transcription	Fetal Brain Female	brain
20	chr6:24585000-24585800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:24585200-24586000	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr6:24585200-24588200	Weak transcription	Hela-S3	cervix
23	chr6:24585400-24587400	Enhancers	H9 Cell Line	embryonic stem cell

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