Variant report

Variant	rs6901928
Chromosome Location	chr6:37937302-37937303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13437477	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs1979759	0.82[YRI][hapmap]
rs4714123	0.92[YRI][hapmap]
rs73417962	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73417990	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7752686	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9357261	0.92[YRI][hapmap]
rs9462372	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470724	0.92[YRI][hapmap]
rs9470759	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs9470762	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37922600-37939000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:37922800-37938600	Weak transcription	Fetal Lung	lung
3	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:37923000-37939000	Weak transcription	Ovary	ovary
6	chr6:37923600-37938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:37923600-37942200	Weak transcription	Aorta	Aorta
8	chr6:37923600-37947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:37924600-37941600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:37925200-37938800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:37925400-37939400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:37926800-37955000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:37927000-37937600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:37927000-37942400	Weak transcription	Psoas Muscle	Psoas
15	chr6:37927200-37942400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:37929400-37938200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:37929400-37938800	Weak transcription	Fetal Stomach	stomach
18	chr6:37929400-37939400	Weak transcription	Spleen	Spleen
19	chr6:37929400-37942000	Weak transcription	Esophagus	oesophagus
20	chr6:37929400-37947800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:37929400-37953200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:37930200-37941600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:37930200-37942200	Weak transcription	HepG2	liver
24	chr6:37930400-37938200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:37930400-37939400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:37930600-37941800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:37930800-37939200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:37931000-37939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37931000-37939400	Weak transcription	Fetal Thymus	thymus
30	chr6:37933800-37938400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:37933800-37938600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:37933800-37939000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:37934000-37939200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:37934400-37939000	Weak transcription	Small Intestine	intestine
35	chr6:37934400-37939400	Weak transcription	HSMMtube	muscle
36	chr6:37934400-37940600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:37934400-37949800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:37934800-37947400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:37935000-37942400	Weak transcription	HSMM	muscle
40	chr6:37935000-37942400	Weak transcription	NHDF-Ad	bronchial
41	chr6:37935000-37947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:37935200-37937600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:37935200-37939200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:37935200-37942400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:37935200-37942400	Weak transcription	A549	lung
46	chr6:37935200-37947000	Weak transcription	NHEK	skin
47	chr6:37936400-37937600	Enhancers	Colon Smooth Muscle	Colon
48	chr6:37936400-37941600	Weak transcription	Primary B cells from cord blood	blood
49	chr6:37936600-37939000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:37936600-37941200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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