Variant report

Variant	rs9470759
Chromosome Location	chr6:38029105-38029106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13437477	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4714123	0.85[YRI][hapmap]
rs6901928	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs73417962	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73417990	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7752686	0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9357261	0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs9366947	0.84[AFR][1000 genomes]
rs9462372	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs9470724	0.85[YRI][hapmap]
rs9470762	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37985000-38030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:37998600-38029200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:38002400-38029400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:38004200-38029200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:38011800-38029400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:38012400-38029400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:38015400-38029600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:38015600-38029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:38016200-38029400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:38017200-38055000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:38017400-38031000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:38018400-38030000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:38019000-38031800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:38019400-38029400	Weak transcription	Right Ventricle	heart
15	chr6:38019400-38029400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:38020000-38029400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:38020200-38029200	Weak transcription	A549	lung
18	chr6:38020200-38030000	Weak transcription	Fetal Brain Female	brain
19	chr6:38020400-38046200	Weak transcription	Stomach Mucosa	stomach
20	chr6:38020800-38029400	Weak transcription	Spleen	Spleen
21	chr6:38021000-38029200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:38021400-38029400	Weak transcription	Esophagus	oesophagus
23	chr6:38021400-38029400	Weak transcription	Left Ventricle	heart
24	chr6:38021400-38029400	Weak transcription	Lung	lung
25	chr6:38022600-38030000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:38023000-38054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:38023200-38029200	Weak transcription	K562	blood
28	chr6:38023200-38029400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:38023200-38029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:38023200-38029800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:38023200-38052800	Weak transcription	Gastric	stomach
32	chr6:38023400-38029400	Weak transcription	Pancreas	Pancrea
33	chr6:38023600-38029600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:38024000-38029400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:38024400-38029400	Weak transcription	Liver	Liver
36	chr6:38024400-38029400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:38024400-38029600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:38024400-38033200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr6:38024400-38040000	Weak transcription	Fetal Heart	heart
40	chr6:38024600-38029400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:38024600-38029400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:38024600-38029400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:38024600-38029400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:38024600-38029400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:38024600-38029400	Weak transcription	Aorta	Aorta
46	chr6:38024600-38030800	Weak transcription	Brain Angular Gyrus	brain
47	chr6:38024600-38033800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:38024600-38035200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:38024600-38041800	Weak transcription	Fetal Brain Male	brain
50	chr6:38024600-38045000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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