Variant report

Variant	rs6902022
Chromosome Location	chr6:76038328-76038329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10943241	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2703668	0.81[EUR][1000 genomes]
rs2703708	0.81[EUR][1000 genomes]
rs2703711	0.84[EUR][1000 genomes]
rs2703715	0.80[EUR][1000 genomes]
rs2703716	0.81[EUR][1000 genomes]
rs2808188	0.84[EUR][1000 genomes]
rs2808189	0.83[EUR][1000 genomes]
rs2808190	0.83[EUR][1000 genomes]
rs2808208	0.84[EUR][1000 genomes]
rs2842451	0.83[EUR][1000 genomes]
rs2842452	0.83[EUR][1000 genomes]
rs2842455	0.83[EUR][1000 genomes]
rs2951934	0.86[EUR][1000 genomes]
rs2951937	0.81[EUR][1000 genomes]
rs2951939	0.83[EUR][1000 genomes]
rs2951945	0.83[EUR][1000 genomes]
rs2951946	0.84[EUR][1000 genomes]
rs2951947	0.84[EUR][1000 genomes]
rs2951949	0.83[EUR][1000 genomes]
rs2951952	0.84[EUR][1000 genomes]
rs2998371	0.84[EUR][1000 genomes]
rs35460935	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3935857	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4131550	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4273651	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4275021	0.83[ASN][1000 genomes]
rs4283851	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4295446	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4324739	0.88[EUR][1000 genomes]
rs4361582	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4374801	0.85[ASN][1000 genomes]
rs4380723	0.88[EUR][1000 genomes]
rs4498313	0.88[EUR][1000 genomes]
rs4535511	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4541712	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4568415	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4588651	0.83[EUR][1000 genomes]
rs4708178	0.80[EUR][1000 genomes]
rs4708181	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6453825	0.88[EUR][1000 genomes]
rs6903526	0.83[ASN][1000 genomes]
rs6913979	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6921940	0.88[EUR][1000 genomes]
rs6929270	0.83[ASN][1000 genomes]
rs6933680	0.88[EUR][1000 genomes]
rs7451911	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7740648	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753528	0.88[EUR][1000 genomes]
rs7766441	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7772989	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9341514	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9341515	0.80[ASN][1000 genomes]
rs9341516	0.80[ASN][1000 genomes]
rs9343281	0.80[EUR][1000 genomes]
rs9343283	0.83[ASN][1000 genomes]
rs9352203	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9352204	0.90[EUR][1000 genomes]
rs9352205	0.90[EUR][1000 genomes]
rs9352206	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9352207	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9443168	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9443171	0.82[EUR][1000 genomes]
rs9689477	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016804	chr6:75775846-76188585	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538310	chr6:75775846-76188585	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024079	chr6:75848556-76238519	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
6	nsv830698	chr6:75968810-76115592	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
8	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76016200-76044400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:76024800-76042200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:76024800-76047200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:76027800-76044000	Weak transcription	Right Ventricle	heart
5	chr6:76028200-76043800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:76028200-76044000	Weak transcription	Aorta	Aorta
7	chr6:76029800-76044000	Weak transcription	Left Ventricle	heart
8	chr6:76033400-76044000	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:76034000-76041800	Weak transcription	Fetal Lung	lung
10	chr6:76037000-76041200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:76037000-76044000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:76037200-76038600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:76037200-76039000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:76037200-76040000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:76037200-76041000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:76037200-76041000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:76037200-76041000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:76037200-76041200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:76037200-76041200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:76037200-76041200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:76037200-76041200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:76037200-76041400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:76037200-76042400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:76037200-76042400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:76037800-76039000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:76037800-76041200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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