Variant report

Variant	rs6902604
Chromosome Location	chr6:49354537-49354538
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10948498	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11752340	0.82[EUR][1000 genomes]
rs11752910	0.82[EUR][1000 genomes]
rs11755646	0.82[EUR][1000 genomes]
rs11757098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12173703	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175251	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16879241	0.86[EUR][1000 genomes]
rs17805348	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1924982	0.86[EUR][1000 genomes]
rs2143730	0.82[EUR][1000 genomes]
rs28841337	0.85[EUR][1000 genomes]
rs471220	0.86[EUR][1000 genomes]
rs471316	0.85[EUR][1000 genomes]
rs471332	0.86[EUR][1000 genomes]
rs472313	0.83[EUR][1000 genomes]
rs474021	0.82[EUR][1000 genomes]
rs474897	0.83[EUR][1000 genomes]
rs475757	0.86[EUR][1000 genomes]
rs478550	0.86[EUR][1000 genomes]
rs481270	0.86[EUR][1000 genomes]
rs481959	0.81[EUR][1000 genomes]
rs482582	0.85[EUR][1000 genomes]
rs482930	0.84[EUR][1000 genomes]
rs483192	0.86[EUR][1000 genomes]
rs483827	0.81[EUR][1000 genomes]
rs484942	0.86[EUR][1000 genomes]
rs485383	0.86[EUR][1000 genomes]
rs485474	0.86[EUR][1000 genomes]
rs485772	0.86[EUR][1000 genomes]
rs485976	0.86[EUR][1000 genomes]
rs495303	0.86[EUR][1000 genomes]
rs495525	0.82[EUR][1000 genomes]
rs496864	0.86[EUR][1000 genomes]
rs498825	0.86[EUR][1000 genomes]
rs500811	0.84[EUR][1000 genomes]
rs501835	0.86[EUR][1000 genomes]
rs503680	0.86[EUR][1000 genomes]
rs512497	0.86[EUR][1000 genomes]
rs520470	0.86[EUR][1000 genomes]
rs520599	0.86[EUR][1000 genomes]
rs527399	0.84[EUR][1000 genomes]
rs529464	0.85[EUR][1000 genomes]
rs530156	0.85[EUR][1000 genomes]
rs530458	0.86[EUR][1000 genomes]
rs532017	0.86[EUR][1000 genomes]
rs532756	0.84[EUR][1000 genomes]
rs532785	0.86[EUR][1000 genomes]
rs537190	0.86[EUR][1000 genomes]
rs538016	0.86[EUR][1000 genomes]
rs539026	0.86[EUR][1000 genomes]
rs540164	0.86[EUR][1000 genomes]
rs543305	0.83[EUR][1000 genomes]
rs543805	0.84[EUR][1000 genomes]
rs544542	0.84[EUR][1000 genomes]
rs545472	0.86[EUR][1000 genomes]
rs547757	0.86[EUR][1000 genomes]
rs548644	0.86[EUR][1000 genomes]
rs549464	0.86[EUR][1000 genomes]
rs551459	0.83[EUR][1000 genomes]
rs551476	0.81[EUR][1000 genomes]
rs553437	0.86[EUR][1000 genomes]
rs555134	0.84[EUR][1000 genomes]
rs556711	0.86[EUR][1000 genomes]
rs556807	0.86[EUR][1000 genomes]
rs559277	0.81[EUR][1000 genomes]
rs562369	0.86[EUR][1000 genomes]
rs563271	0.84[EUR][1000 genomes]
rs563358	0.82[EUR][1000 genomes]
rs564042	0.86[EUR][1000 genomes]
rs568369	0.86[EUR][1000 genomes]
rs568563	0.86[EUR][1000 genomes]
rs569142	0.86[EUR][1000 genomes]
rs574909	0.81[EUR][1000 genomes]
rs575461	0.86[EUR][1000 genomes]
rs577530	0.86[EUR][1000 genomes]
rs579712	0.84[EUR][1000 genomes]
rs580792	0.81[EUR][1000 genomes]
rs6458682	0.82[EUR][1000 genomes]
rs6902615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903158	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922862	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6923065	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6927463	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6935826	0.83[EUR][1000 genomes]
rs72869253	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72870365	0.86[EUR][1000 genomes]
rs7450140	0.84[EUR][1000 genomes]
rs7764755	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349492	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9357609	0.82[EUR][1000 genomes]
rs9357610	0.86[EUR][1000 genomes]
rs9357612	0.84[EUR][1000 genomes]
rs9367355	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369883	0.81[EUR][1000 genomes]
rs9369884	0.84[EUR][1000 genomes]
rs9369886	0.86[EUR][1000 genomes]
rs9369902	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9381766	0.84[EUR][1000 genomes]
rs9381767	0.86[EUR][1000 genomes]
rs9395477	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024959	chr6:49290141-49652124	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021136	chr6:49295037-49631278	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv915806	chr6:49313295-49430422	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv462943	chr6:49319025-49376924	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv603080	chr6:49319025-49376924	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6902604	MUT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49354200-49355000	Active TSS	K562	blood

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