Variant report

Variant	rs10948498
Chromosome Location	chr1:211063125-211063126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11752340	0.81[EUR][1000 genomes]
rs11752910	0.81[EUR][1000 genomes]
rs11755646	0.81[EUR][1000 genomes]
rs11757098	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12173703	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12175251	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16879241	0.85[EUR][1000 genomes]
rs17805348	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1924982	0.85[EUR][1000 genomes]
rs2143730	0.81[EUR][1000 genomes]
rs28841337	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs471220	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs471316	0.84[EUR][1000 genomes]
rs471332	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs472313	0.82[EUR][1000 genomes]
rs474021	0.81[EUR][1000 genomes]
rs474897	0.82[EUR][1000 genomes]
rs475757	0.85[EUR][1000 genomes]
rs478550	0.85[EUR][1000 genomes]
rs481270	0.85[EUR][1000 genomes]
rs482582	0.84[EUR][1000 genomes]
rs482930	0.83[EUR][1000 genomes]
rs483192	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs484942	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs485383	0.85[EUR][1000 genomes]
rs485474	0.85[EUR][1000 genomes]
rs485772	0.85[EUR][1000 genomes]
rs485976	0.85[EUR][1000 genomes]
rs495303	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs495525	0.81[EUR][1000 genomes]
rs496864	0.85[EUR][1000 genomes]
rs498825	0.85[EUR][1000 genomes]
rs500811	0.83[EUR][1000 genomes]
rs501835	0.85[EUR][1000 genomes]
rs503680	0.85[EUR][1000 genomes]
rs512497	0.85[EUR][1000 genomes]
rs520470	0.85[EUR][1000 genomes]
rs520599	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs527399	0.83[EUR][1000 genomes]
rs529464	0.84[EUR][1000 genomes]
rs530156	0.84[EUR][1000 genomes]
rs530458	0.85[EUR][1000 genomes]
rs532017	0.85[EUR][1000 genomes]
rs532756	0.83[EUR][1000 genomes]
rs532785	0.85[EUR][1000 genomes]
rs537190	0.85[EUR][1000 genomes]
rs538016	0.85[EUR][1000 genomes]
rs539026	0.85[EUR][1000 genomes]
rs540164	0.85[EUR][1000 genomes]
rs543305	0.82[EUR][1000 genomes]
rs543805	0.83[EUR][1000 genomes]
rs544542	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs545472	0.85[EUR][1000 genomes]
rs547757	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs548644	0.85[EUR][1000 genomes]
rs549464	0.85[EUR][1000 genomes]
rs551459	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs553437	0.85[EUR][1000 genomes]
rs555134	0.83[EUR][1000 genomes]
rs556711	0.85[EUR][1000 genomes]
rs556807	0.85[EUR][1000 genomes]
rs562369	0.85[EUR][1000 genomes]
rs563271	0.83[EUR][1000 genomes]
rs563358	0.81[EUR][1000 genomes]
rs564042	0.85[EUR][1000 genomes]
rs568369	0.85[EUR][1000 genomes]
rs568563	0.85[EUR][1000 genomes]
rs569142	0.85[EUR][1000 genomes]
rs575461	0.85[EUR][1000 genomes]
rs577530	0.85[EUR][1000 genomes]
rs579712	0.83[EUR][1000 genomes]
rs580792	0.80[EUR][1000 genomes]
rs6458682	0.81[EUR][1000 genomes]
rs6902604	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6902615	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6903158	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6922862	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6923065	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6927463	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6935826	0.82[EUR][1000 genomes]
rs72869253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72870365	0.85[EUR][1000 genomes]
rs7450140	0.83[EUR][1000 genomes]
rs7764755	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9349492	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9357609	0.81[EUR][1000 genomes]
rs9357610	0.85[EUR][1000 genomes]
rs9357612	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9367355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9369884	0.83[EUR][1000 genomes]
rs9369886	0.85[EUR][1000 genomes]
rs9369902	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9381766	0.83[EUR][1000 genomes]
rs9381767	0.85[EUR][1000 genomes]
rs9395477	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211056800-211078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211058400-211077400	Weak transcription	HSMMtube	muscle
3	chr1:211058600-211067200	Weak transcription	HSMM	muscle

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