Variant report

Variant	rs6902844
Chromosome Location	chr6:134072959-134072960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17062835	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60079328	0.85[AMR][1000 genomes]
rs61155049	0.85[AMR][1000 genomes]
rs6922702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923036	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73559243	0.85[AMR][1000 genomes]
rs73559250	0.87[AMR][1000 genomes]
rs73559252	0.87[AMR][1000 genomes]
rs7741228	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134063000-134073000	Weak transcription	Fetal Kidney	kidney
2	chr6:134067600-134075000	Weak transcription	Stomach Mucosa	stomach
3	chr6:134068000-134073000	Weak transcription	A549	lung
4	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
5	chr6:134070000-134073000	Weak transcription	NHDF-Ad	bronchial
6	chr6:134070400-134077000	Weak transcription	NHLF	lung
7	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:134071000-134074200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
10	chr6:134072400-134076200	Enhancers	Ovary	ovary
11	chr6:134072600-134073000	Weak transcription	Fetal Stomach	stomach
12	chr6:134072600-134079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:134072800-134073600	Enhancers	Osteobl	bone
14	chr6:134072800-134073800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:134072800-134079600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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