Variant report

Variant	rs7741228
Chromosome Location	chr6:134081905-134081906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134076418..134078236-chr6:134080183..134082934,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17062835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60079328	0.85[AMR][1000 genomes]
rs61155049	0.85[AMR][1000 genomes]
rs6902844	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73559243	0.85[AMR][1000 genomes]
rs73559250	0.87[AMR][1000 genomes]
rs73559252	0.87[AMR][1000 genomes]
rs7749333	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134068600-134082200	Weak transcription	Aorta	Aorta
2	chr6:134070400-134082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:134072200-134082200	Enhancers	Fetal Lung	lung
4	chr6:134073400-134090600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:134077800-134085600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:134078000-134085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:134078200-134082000	Weak transcription	HSMMtube	muscle
8	chr6:134078200-134082000	Weak transcription	NHDF-Ad	bronchial
9	chr6:134078200-134085600	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:134079200-134082200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:134079200-134084000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:134079600-134084000	Weak transcription	Ovary	ovary
13	chr6:134080000-134082000	Enhancers	A549	lung
14	chr6:134080400-134082000	Weak transcription	HSMM	muscle
15	chr6:134080800-134082000	Enhancers	Fetal Stomach	stomach
16	chr6:134080800-134082600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:134081200-134082400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:134081200-134084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:134081200-134086600	Enhancers	Osteobl	bone
20	chr6:134081400-134082800	Enhancers	NHLF	lung
21	chr6:134081600-134082000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:134081800-134082400	Enhancers	Fetal Kidney	kidney
23	chr6:134081800-134082400	Enhancers	Psoas Muscle	Psoas
24	chr6:134081800-134082400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:134081800-134082400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:134081800-134083600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:134081800-134085800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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