Variant report

Variant	rs6903177
Chromosome Location	chr6:118695049-118695050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1016095	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10457328	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10457334	0.84[ASN][1000 genomes]
rs10484287	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1051429	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10872163	0.85[ASN][1000 genomes]
rs11153735	0.85[ASN][1000 genomes]
rs11153737	0.85[ASN][1000 genomes]
rs11153738	0.85[ASN][1000 genomes]
rs12196194	0.80[ASN][1000 genomes]
rs12204456	0.90[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs1344178	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1344249	0.84[ASN][1000 genomes]
rs1547326	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs2077161	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181513	0.90[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap]
rs2213858	0.82[ASN][1000 genomes]
rs2356175	0.86[ASN][1000 genomes]
rs2356179	0.85[ASN][1000 genomes]
rs2356180	0.85[ASN][1000 genomes]
rs2356182	0.84[ASN][1000 genomes]
rs2356493	0.82[ASN][1000 genomes]
rs25421	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs25423	0.90[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3734382	0.90[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs3951041	0.85[ASN][1000 genomes]
rs3951044	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4027875	0.85[ASN][1000 genomes]
rs4027876	0.85[ASN][1000 genomes]
rs4027877	0.83[ASN][1000 genomes]
rs4027878	0.85[ASN][1000 genomes]
rs4027881	0.85[ASN][1000 genomes]
rs4027883	0.85[ASN][1000 genomes]
rs4314526	0.83[ASN][1000 genomes]
rs4489189	0.84[ASN][1000 genomes]
rs4502975	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4568488	0.85[ASN][1000 genomes]
rs4946349	0.90[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs55868726	0.84[ASN][1000 genomes]
rs6569017	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6904968	0.85[ASN][1000 genomes]
rs6907846	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6919887	0.90[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6923888	0.85[ASN][1000 genomes]
rs6929390	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs6936661	0.84[ASN][1000 genomes]
rs6937642	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7740922	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7741644	0.94[JPT][hapmap]
rs7745692	0.85[ASN][1000 genomes]
rs7749208	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7749694	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs7756973	0.85[ASN][1000 genomes]
rs7757337	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7757815	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7758933	0.85[ASN][1000 genomes]
rs7761996	0.82[ASN][1000 genomes]
rs7764093	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7766732	0.85[ASN][1000 genomes]
rs7766907	0.85[ASN][1000 genomes]
rs7769937	0.85[ASN][1000 genomes]
rs9285429	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9320650	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9320653	0.85[ASN][1000 genomes]
rs9481790	0.84[ASN][1000 genomes]
rs9481795	0.82[ASN][1000 genomes]
rs9481807	0.84[ASN][1000 genomes]
rs9481815	0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9481819	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs9489368	0.85[ASN][1000 genomes]
rs9489373	0.85[ASN][1000 genomes]
rs9489376	0.85[ASN][1000 genomes]
rs9489377	0.85[ASN][1000 genomes]
rs9489378	0.85[ASN][1000 genomes]
rs9489401	0.84[ASN][1000 genomes]
rs9489403	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9489406	0.82[ASN][1000 genomes]
rs9489414	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9489417	0.80[ASN][1000 genomes]
rs9489419	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9489420	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs9489424	0.90[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap]
rs9489432	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9489437	0.90[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap]
rs9489438	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9489439	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9717286	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv604555	chr6:118695049-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118688200-118700200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:118691400-118700400	Enhancers	Fetal Heart	heart
3	chr6:118692200-118699000	Weak transcription	Psoas Muscle	Psoas
4	chr6:118693000-118695200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:118694200-118699600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:118694800-118695600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:118694800-118696000	Enhancers	Left Ventricle	heart
8	chr6:118694800-118698200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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