Variant report

Variant	rs7764093
Chromosome Location	chr6:118692304-118692305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1016095	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs10457328	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10484287	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs1051429	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs11153735	0.89[EUR][1000 genomes]
rs12204456	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs1344178	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1344249	0.83[CEU][hapmap]
rs1547326	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs2077161	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2181513	0.84[CEU][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap]
rs2356175	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs25421	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs25423	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs3734382	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs3951041	0.89[EUR][1000 genomes]
rs3951044	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4027875	0.89[EUR][1000 genomes]
rs4027876	0.89[EUR][1000 genomes]
rs4027877	0.88[EUR][1000 genomes]
rs4027878	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4502975	0.83[CEU][hapmap];0.88[JPT][hapmap]
rs4946339	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6569017	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6903177	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6904968	0.88[EUR][1000 genomes]
rs6907846	0.85[ASN][1000 genomes]
rs6923888	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6929390	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs6937642	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7740922	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs7741644	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs7749208	0.93[JPT][hapmap]
rs7749694	0.83[CEU][hapmap];0.88[JPT][hapmap]
rs7756973	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7757337	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs7757815	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7758933	0.88[EUR][1000 genomes]
rs7766732	0.89[EUR][1000 genomes]
rs7766907	0.89[EUR][1000 genomes]
rs9285429	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9320650	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9320653	0.89[EUR][1000 genomes]
rs9481815	0.89[JPT][hapmap]
rs9481819	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs9489368	0.89[EUR][1000 genomes]
rs9489403	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs9489414	0.83[CEU][hapmap];0.88[JPT][hapmap]
rs9489419	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs9489420	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs9489424	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs9489432	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs9489437	0.84[CEU][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs9489438	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs9489439	0.84[CEU][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118686000-118694400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:118688200-118700200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:118691400-118700400	Enhancers	Fetal Heart	heart
4	chr6:118691600-118692800	Weak transcription	Left Ventricle	heart
5	chr6:118691600-118693400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:118691800-118694800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:118692000-118694800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:118692200-118693200	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:118692200-118699000	Weak transcription	Psoas Muscle	Psoas

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