Variant report

Variant	rs6903638
Chromosome Location	chr6:58775473-58775474
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:26787771..26789874-chr6:58775360..58778093,2	MCF-7	breast:
2	chr6:58775076..58778073-chr8:103250732..103252303,2	K562	blood:
3	chr20:36661511..36663112-chr6:58773928..58776889,2	K562	blood:
4	chr17:57920709..57924714-chr6:58775095..58779071,5	MCF-7	breast:
5	chr17:57697051..57699517-chr6:58775454..58778452,2	MCF-7	breast:
6	chr14:19022553..19024053-chr6:58774785..58777168,2	MCF-7	breast:
7	chr10:74031778..74033740-chr6:58774757..58776794,2	MCF-7	breast:
8	chr17:57920187..57922882-chr6:58774753..58776582,2	MCF-7	breast:
9	chr12:80435495..80437852-chr6:58775102..58777367,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246263	Chromatin interaction
ENSG00000141367	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000048392	Chromatin interaction
ENSG00000101407	Chromatin interaction
ENSG00000101413	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv427758	chr6:58502261-58780166	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv603242	chr6:58754939-58776198	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv603243	chr6:58754939-58779628	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
5	esv3401131	chr6:58771993-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
6	esv3348712	chr6:58772493-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
7	esv3351952	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
8	esv3370259	chr6:58772493-58780166	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
9	esv3402710	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
10	nsv821263	chr6:58773370-58780132	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
11	esv16605	chr6:58773521-58780132	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
12	esv3522846	chr6:58773602-58777174	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
13	esv3522847	chr6:58773602-58777174	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
14	esv4510	chr6:58773913-58779741	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
15	esv2440024	chr6:58773927-58778724	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
16	esv6861	chr6:58774124-58777928	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
17	nsv603244	chr6:58774249-58776961	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
18	esv8948	chr6:58774500-58779296	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
19	esv5564	chr6:58774524-58778232	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	53 gene(s)	inside rSNPs	diseases
20	esv5877	chr6:58774642-58778682	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
21	esv8678	chr6:58775025-58778770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
22	esv3517686	chr6:58775050-58776606	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
23	esv3517687	chr6:58775050-58776606	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
24	esv3345082	chr6:58775117-58777887	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
25	nsv603245	chr6:58775200-58778429	Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
26	nsv603246	chr6:58775200-58780055	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
27	esv3404794	chr6:58775461-58776606	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58775600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr6:58773400-58775600	ZNF genes & repeats	Liver	Liver
3	chr6:58773400-58775800	ZNF genes & repeats	HMEC	breast
4	chr6:58773400-58776000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:58773400-58776000	ZNF genes & repeats	NH-A	brain
6	chr6:58773400-58776200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:58773400-58776200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:58773400-58776400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:58773400-58776400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr6:58773400-58776600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr6:58773400-58776600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr6:58773400-58776600	ZNF genes & repeats	Gastric	stomach
13	chr6:58773400-58776600	ZNF genes & repeats	Small Intestine	intestine
14	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
18	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
22	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
23	chr6:58773600-58776600	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr6:58773600-58776600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:58773600-58779200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
26	chr6:58773600-58779400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
27	chr6:58773600-58779400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr6:58773600-58779400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr6:58773600-58779400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
30	chr6:58773600-58779400	ZNF genes & repeats	Primary B cells from cord blood	blood
31	chr6:58773600-58779400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr6:58773600-58779400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:58773600-58779400	ZNF genes & repeats	Fetal Intestine Large	intestine
34	chr6:58774800-58775800	Weak transcription	HSMMtube	muscle
35	chr6:58774800-58776400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:58774800-58776400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:58774800-58776400	Weak transcription	Brain Germinal Matrix	brain
38	chr6:58774800-58776600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:58774800-58776600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:58774800-58776600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:58774800-58776600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:58774800-58776600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:58774800-58776600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:58774800-58776600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:58774800-58776600	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:58774800-58776600	Weak transcription	Esophagus	oesophagus
47	chr6:58774800-58776600	Weak transcription	Fetal Brain Male	brain
48	chr6:58774800-58776600	Weak transcription	Fetal Heart	heart
49	chr6:58774800-58776600	Weak transcription	Fetal Kidney	kidney
50	chr6:58774800-58776600	Weak transcription	Placenta	Placenta

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