Variant report

Variant	rs6904019
Chromosome Location	chr6:36202119-36202120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36198112..36199990-chr6:36201135..36202981,2	MCF-7	breast:
2	chr6:36200507..36203942-chr6:36214708..36217317,3	K562	blood:
3	chr6:36163215..36166247-chr6:36200158..36203502,4	K562	blood:
4	chr6:36201960..36204325-chr6:36233280..36235453,2	K562	blood:
5	chr6:36201832..36203430-chr6:36207707..36210033,2	K562	blood:
6	chr6:36162586..36164899-chr6:36199631..36203019,4	K562	blood:

Variant related genes	Relation type
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56727895	0.94[ASN][1000 genomes]
rs58665009	0.94[ASN][1000 genomes]
rs61435713	0.94[ASN][1000 genomes]
rs73413695	0.94[ASN][1000 genomes]
rs7754042	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7774116	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36164400-36203000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36173400-36202600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:36174000-36204600	Strong transcription	Primary T cells from cord blood	blood
4	chr6:36185800-36210600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:36186200-36202600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:36189000-36202600	Strong transcription	Fetal Muscle Leg	muscle
7	chr6:36189000-36204800	Strong transcription	Fetal Stomach	stomach
8	chr6:36189200-36202400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:36189600-36204400	Strong transcription	Brain Germinal Matrix	brain
10	chr6:36189800-36202800	Strong transcription	Brain Hippocampus Middle	brain
11	chr6:36189800-36203800	Strong transcription	Stomach Smooth Muscle	stomach
12	chr6:36192200-36203400	Weak transcription	Right Atrium	heart
13	chr6:36192400-36202200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:36193800-36206800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:36194600-36202200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:36194600-36207200	Weak transcription	Fetal Heart	heart
17	chr6:36195200-36204600	Strong transcription	Fetal Brain Female	brain
18	chr6:36196000-36209200	Weak transcription	K562	blood
19	chr6:36196200-36202400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr6:36197200-36202400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr6:36197400-36202800	Weak transcription	Hela-S3	cervix
22	chr6:36197800-36203200	Weak transcription	Stomach Mucosa	stomach
23	chr6:36198000-36204400	Weak transcription	NH-A	brain
24	chr6:36198200-36203000	Weak transcription	HSMM	muscle
25	chr6:36198400-36209200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:36198400-36211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:36198600-36203200	Weak transcription	A549	lung
28	chr6:36198600-36204400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:36198800-36202800	Weak transcription	Psoas Muscle	Psoas
30	chr6:36198800-36209600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:36199000-36210800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:36199200-36203200	Weak transcription	Fetal Brain Male	brain
33	chr6:36199200-36203400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:36199200-36204400	Strong transcription	Fetal Intestine Small	intestine
35	chr6:36199400-36207400	Weak transcription	Brain Substantia Nigra	brain
36	chr6:36199400-36211000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:36199600-36202600	Weak transcription	Brain Angular Gyrus	brain
38	chr6:36199600-36203400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:36199600-36205000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:36199600-36205800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:36199600-36209200	Weak transcription	GM12878-XiMat	blood
42	chr6:36199800-36211400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:36199800-36216200	Weak transcription	NHLF	lung
44	chr6:36200000-36203000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:36200000-36203800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:36200000-36204000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:36200200-36204000	Weak transcription	Small Intestine	intestine
48	chr6:36200200-36208000	Weak transcription	Esophagus	oesophagus
49	chr6:36200200-36209600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:36200200-36210600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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