Variant report

Variant	rs73413695
Chromosome Location	chr6:36171145-36171146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:36171043-36171476	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:35995409..35998293-chr6:36169969..36172961,2	K562	blood:
2	chr6:36081952..36084295-chr6:36170324..36171879,2	MCF-7	breast:
3	chr17:46986818..46988869-chr6:36169184..36171637,2	MCF-7	breast:

Variant related genes	Relation type
BRPF3	TF binding region
ENSG00000159202	Chromatin interaction
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2859138	0.81[ASN][1000 genomes]
rs56727895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58665009	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61435713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904019	0.94[ASN][1000 genomes]
rs6905700	1.00[AMR][1000 genomes]
rs7754042	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774116	0.88[ASN][1000 genomes]
rs9470224	0.81[ASN][1000 genomes]
rs9470228	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36164400-36203000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36166200-36192200	Strong transcription	Fetal Muscle Trunk	muscle
3	chr6:36166400-36173000	Genic enhancers	Dnd41	blood
4	chr6:36166400-36176000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:36166400-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:36166600-36200200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:36166800-36171200	Strong transcription	Fetal Muscle Leg	muscle
8	chr6:36166800-36185200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:36166800-36201800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:36167000-36173000	Strong transcription	Fetal Kidney	kidney
11	chr6:36167000-36188000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:36167000-36201800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:36167200-36201400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:36167400-36191600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:36167400-36201600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:36167600-36172000	Strong transcription	Fetal Lung	lung
17	chr6:36167600-36172800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:36167600-36184000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:36167600-36199800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:36167600-36201200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:36167800-36171400	Strong transcription	Fetal Brain Female	brain
22	chr6:36167800-36171400	Strong transcription	Fetal Thymus	thymus
23	chr6:36167800-36171400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr6:36167800-36171400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr6:36167800-36188000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:36167800-36188400	Strong transcription	Osteobl	bone
27	chr6:36167800-36192000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:36167800-36201400	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr6:36168000-36171400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:36168000-36172000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:36168000-36172400	Strong transcription	Brain Substantia Nigra	brain
32	chr6:36168000-36172800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:36168000-36176400	Strong transcription	NHEK	skin
34	chr6:36168000-36180200	Strong transcription	Aorta	Aorta
35	chr6:36168000-36180400	Strong transcription	NHLF	lung
36	chr6:36168000-36188000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:36168000-36188000	Strong transcription	HSMMtube	muscle
38	chr6:36168000-36190600	Strong transcription	HSMM	muscle
39	chr6:36168000-36191200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:36168000-36192400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:36168000-36196800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:36168000-36200400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr6:36168000-36201400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:36168200-36171400	Strong transcription	NH-A	brain
45	chr6:36168200-36171600	Genic enhancers	Primary T cells from cord blood	blood
46	chr6:36168200-36171600	Strong transcription	Adipose Nuclei	Adipose
47	chr6:36168200-36172600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:36168200-36173000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:36168200-36173800	Strong transcription	Left Ventricle	heart
50	chr6:36168200-36186000	Strong transcription	Right Ventricle	heart

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