Variant report

Variant	rs6905700
Chromosome Location	chr6:36102118-36102119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36100220..36102559-chr6:36104704..36106593,2	MCF-7	breast:
2	chr6:36089580..36092157-chr6:36100589..36102722,2	MCF-7	breast:
3	chr6:36097672..36103046-chr6:36163327..36166048,5	MCF-7	breast:
4	chr6:36099568..36102831-chr6:36104693..36107135,4	MCF-7	breast:
5	chr6:36098131..36102554-chr6:36163258..36166179,4	K562	blood:
6	chr6:36097197..36101295-chr6:36101453..36104026,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156711	Chromatin interaction
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2859138	0.80[ASN][1000 genomes]
rs56306008	0.83[EUR][1000 genomes]
rs56727895	1.00[AMR][1000 genomes]
rs57420421	0.83[EUR][1000 genomes]
rs57747046	0.83[EUR][1000 genomes]
rs58665009	1.00[AMR][1000 genomes]
rs58707214	0.83[EUR][1000 genomes]
rs59374232	0.83[EUR][1000 genomes]
rs59752650	0.83[EUR][1000 genomes]
rs61105253	0.83[EUR][1000 genomes]
rs61337522	0.83[EUR][1000 genomes]
rs61435713	1.00[AMR][1000 genomes]
rs73413679	0.83[EUR][1000 genomes]
rs73413691	0.83[EUR][1000 genomes]
rs73413692	0.83[EUR][1000 genomes]
rs73413695	1.00[AMR][1000 genomes]
rs73415509	0.83[EUR][1000 genomes]
rs73415510	0.83[EUR][1000 genomes]
rs73415528	0.83[EUR][1000 genomes]
rs7754042	1.00[AMR][1000 genomes]
rs9470224	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36098200-36107000	Weak transcription	HSMMtube	muscle
2	chr6:36099200-36117400	Weak transcription	Psoas Muscle	Psoas
3	chr6:36099800-36104200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:36099800-36104400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:36099800-36107400	Weak transcription	Fetal Brain Male	brain
6	chr6:36099800-36107400	Weak transcription	Fetal Brain Female	brain
7	chr6:36099800-36107600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:36099800-36113400	Weak transcription	Right Atrium	heart
9	chr6:36100000-36102600	Weak transcription	HMEC	breast
10	chr6:36100000-36103000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:36100000-36104400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:36100000-36109600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:36100200-36102800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:36100200-36102800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:36100200-36105800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:36100200-36108200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:36100200-36111000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:36100200-36111000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:36100200-36115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:36100400-36102400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:36100400-36103000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:36100400-36104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:36100400-36107600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:36100400-36107600	Weak transcription	Brain Angular Gyrus	brain
25	chr6:36100400-36107800	Weak transcription	Liver	Liver
26	chr6:36100400-36109400	Weak transcription	Osteobl	bone
27	chr6:36100400-36117400	Weak transcription	Fetal Lung	lung
28	chr6:36100400-36118600	Weak transcription	Small Intestine	intestine
29	chr6:36100600-36103400	Weak transcription	Spleen	Spleen
30	chr6:36100600-36103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:36100600-36103800	Weak transcription	GM12878-XiMat	blood
32	chr6:36100600-36104200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:36100600-36106000	Weak transcription	NHLF	lung
34	chr6:36100600-36108000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:36100600-36108800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:36100600-36110000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:36100800-36103000	Weak transcription	Esophagus	oesophagus
38	chr6:36100800-36103000	Weak transcription	Placenta	Placenta
39	chr6:36100800-36103200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:36100800-36103400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:36100800-36103600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:36100800-36103600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:36100800-36104600	Genic enhancers	Fetal Intestine Large	intestine
44	chr6:36100800-36107400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:36100800-36108000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:36100800-36108200	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr6:36100800-36114600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr6:36101000-36103400	Strong transcription	Primary B cells from cord blood	blood
49	chr6:36101000-36103400	Weak transcription	Thymus	Thymus
50	chr6:36101000-36104200	Weak transcription	Fetal Muscle Leg	muscle

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