Variant report

Variant	rs57747046
Chromosome Location	chr6:36161044-36161045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56306008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57420421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59374232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59752650	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61105253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61337522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905700	0.83[EUR][1000 genomes]
rs73413679	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413691	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413692	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415528	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770696	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36146000-36163400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:36149000-36163600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:36152600-36163600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:36155600-36163400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:36155600-36163400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:36155800-36163600	Weak transcription	Psoas Muscle	Psoas
7	chr6:36156000-36163400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:36157600-36163800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:36158200-36163000	Weak transcription	Primary B cells from cord blood	blood
10	chr6:36158600-36163400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:36159400-36163400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:36159800-36163200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:36160200-36163400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:36160200-36163600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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