Variant report

Variant	rs61337522
Chromosome Location	chr6:36114523-36114524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36109459..36111400-chr6:36113077..36115666,2	K562	blood:
2	chr6:36111948..36113900-chr6:36113922..36116941,3	MCF-7	breast:
3	chr6:36094235..36095737-chr6:36112353..36114750,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf222-1	chr6:36114475-36114707	ENSG00000246982

Variant related genes	Relation type
ENSG00000156711	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56306008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57420421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57747046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59374232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59752650	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61105253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905700	0.83[EUR][1000 genomes]
rs73413679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413691	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415528	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770696	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36099200-36117400	Weak transcription	Psoas Muscle	Psoas
2	chr6:36100200-36115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:36100400-36117400	Weak transcription	Fetal Lung	lung
4	chr6:36100400-36118600	Weak transcription	Small Intestine	intestine
5	chr6:36100800-36114600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:36101200-36129400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:36101400-36114600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:36104800-36114600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:36107600-36114800	Weak transcription	Spleen	Spleen
10	chr6:36107800-36115600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:36108200-36114800	Weak transcription	HepG2	liver
12	chr6:36108400-36114600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:36108400-36114800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:36108400-36115200	Weak transcription	Lung	lung
15	chr6:36108400-36117400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:36108400-36117400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:36108600-36114800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:36108800-36115600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:36109000-36115000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:36110000-36145000	Weak transcription	Primary T cells from cord blood	blood
21	chr6:36110200-36114600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:36110200-36115000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:36110200-36137200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:36110400-36117600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:36111200-36115200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:36111400-36115200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:36111600-36117400	Weak transcription	Adipose Nuclei	Adipose
28	chr6:36112000-36117400	Weak transcription	Placenta	Placenta
29	chr6:36112600-36115000	Weak transcription	Fetal Intestine Small	intestine
30	chr6:36113200-36116000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:36114000-36115200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr6:36114000-36115200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:36114000-36115200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:36114000-36115400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr6:36114200-36115200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr6:36114200-36115400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:36114400-36114800	Weak transcription	Primary B cells from cord blood	blood

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