Variant report

Variant	rs61105253
Chromosome Location	chr6:36221790-36221791
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56306008	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57420421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57747046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59374232	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59752650	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61337522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905700	0.83[EUR][1000 genomes]
rs73413679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73415528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770696	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36218200-36222400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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