Variant report
Variant | rs59374232 |
---|---|
Chromosome Location | chr6:36223124-36223125 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:36163018..36165637-chr6:36222538..36225162,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000096070 | Chromatin interaction |
ENSG00000246982 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs56306008 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57420421 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57747046 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58707214 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59752650 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61105253 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61337522 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6905700 | 0.83[EUR][1000 genomes] |
rs73413679 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73413691 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73413692 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73415509 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73415510 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73415528 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7770696 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv428481 | chr6:36219000-36365746 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
No data |