Variant report
| Variant | rs56306008 |
|---|---|
| Chromosome Location | chr6:36224198-36224199 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000246982 | Chromatin interaction |
| ENSG00000096070 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs57420421 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57747046 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58707214 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59374232 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59752650 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61105253 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61337522 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6905700 | 0.83[EUR][1000 genomes] |
| rs73413679 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73413691 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73413692 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73415509 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73415510 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73415528 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7770696 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428481 | chr6:36219000-36365746 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
