Variant report

Variant	rs6904461
Chromosome Location	chr6:81170267-81170268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81168885..81171049-chr6:81175786..81177907,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260645	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12110981	1.00[EUR][1000 genomes]
rs1370135	1.00[EUR][1000 genomes]
rs1436865	1.00[EUR][1000 genomes]
rs1572942	1.00[EUR][1000 genomes]
rs1595245	1.00[EUR][1000 genomes]
rs1595250	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891637	1.00[EUR][1000 genomes]
rs16891642	1.00[EUR][1000 genomes]
rs16891668	1.00[EUR][1000 genomes]
rs1816563	1.00[EUR][1000 genomes]
rs1821782	1.00[EUR][1000 genomes]
rs1856929	1.00[EUR][1000 genomes]
rs2050921	1.00[EUR][1000 genomes]
rs2164604	1.00[EUR][1000 genomes]
rs2196559	1.00[EUR][1000 genomes]
rs2322836	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2874853	1.00[EUR][1000 genomes]
rs55676897	1.00[EUR][1000 genomes]
rs58820680	1.00[EUR][1000 genomes]
rs6900654	1.00[EUR][1000 genomes]
rs6901552	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909840	1.00[EUR][1000 genomes]
rs6911601	1.00[EUR][1000 genomes]
rs6917382	1.00[EUR][1000 genomes]
rs6928220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929118	1.00[EUR][1000 genomes]
rs71553615	1.00[EUR][1000 genomes]
rs73479733	1.00[EUR][1000 genomes]
rs73748778	1.00[EUR][1000 genomes]
rs73748779	1.00[EUR][1000 genomes]
rs7451565	1.00[EUR][1000 genomes]
rs7749943	1.00[EUR][1000 genomes]
rs7768329	1.00[EUR][1000 genomes]
rs9443785	1.00[EUR][1000 genomes]
rs9443786	1.00[EUR][1000 genomes]
rs9449028	1.00[EUR][1000 genomes]
rs9688419	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
2	chr6:81167600-81175000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:81167600-81181400	Weak transcription	Ovary	ovary
4	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea
5	chr6:81167800-81176200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:81168200-81172800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:81168200-81187000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:81168400-81175200	Weak transcription	Fetal Lung	lung
9	chr6:81169600-81171200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:81169800-81170600	Enhancers	Fetal Heart	heart
11	chr6:81169800-81171000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:81170000-81170400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:81170000-81170600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:81170000-81170600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:81170000-81170600	Enhancers	Hela-S3	cervix
16	chr6:81170000-81170800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:81170000-81170800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:81170000-81170800	Enhancers	HUVEC	blood vessel
19	chr6:81170000-81170800	Enhancers	NHDF-Ad	bronchial
20	chr6:81170000-81170800	Enhancers	NHEK	skin
21	chr6:81170000-81170800	Enhancers	Osteobl	bone
22	chr6:81170200-81170400	Enhancers	HMEC	breast
23	chr6:81170200-81170800	Enhancers	HSMM	muscle
24	chr6:81170200-81170800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links