Variant report

Variant	rs6929118
Chromosome Location	chr6:81084315-81084316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr6:81083961-81084322	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
RPL17P25	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12110981	1.00[EUR][1000 genomes]
rs1370135	1.00[EUR][1000 genomes]
rs1436865	1.00[EUR][1000 genomes]
rs1572942	1.00[EUR][1000 genomes]
rs1595245	1.00[EUR][1000 genomes]
rs16891533	1.00[EUR][1000 genomes]
rs16891594	1.00[EUR][1000 genomes]
rs16891625	1.00[EUR][1000 genomes]
rs16891637	1.00[EUR][1000 genomes]
rs16891642	1.00[EUR][1000 genomes]
rs16891668	1.00[EUR][1000 genomes]
rs1816563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1821782	1.00[EUR][1000 genomes]
rs1856929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2164604	1.00[EUR][1000 genomes]
rs2196559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2322746	1.00[EUR][1000 genomes]
rs2322836	1.00[EUR][1000 genomes]
rs2874853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676897	1.00[EUR][1000 genomes]
rs58820680	1.00[EUR][1000 genomes]
rs60632324	1.00[EUR][1000 genomes]
rs6904461	1.00[EUR][1000 genomes]
rs6909840	1.00[EUR][1000 genomes]
rs6911601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920569	0.95[YRI][hapmap]
rs6928220	1.00[EUR][1000 genomes]
rs71553615	1.00[EUR][1000 genomes]
rs73748778	1.00[EUR][1000 genomes]
rs73748779	1.00[EUR][1000 genomes]
rs7451565	1.00[EUR][1000 genomes]
rs7749943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443785	1.00[EUR][1000 genomes]
rs9443786	1.00[EUR][1000 genomes]
rs9449028	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv970145	chr6:81079495-81091148	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81078600-81105800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81084000-81084400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr6:81084200-81101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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