Variant report

Variant	rs16891533
Chromosome Location	chr6:80923152-80923153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80918332..80920585-chr6:80923073..80926052,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12110981	1.00[EUR][1000 genomes]
rs1370135	1.00[EUR][1000 genomes]
rs1436865	1.00[EUR][1000 genomes]
rs1572942	1.00[EUR][1000 genomes]
rs1595245	1.00[EUR][1000 genomes]
rs16891594	1.00[EUR][1000 genomes]
rs16891625	1.00[EUR][1000 genomes]
rs16891637	1.00[EUR][1000 genomes]
rs16891642	1.00[EUR][1000 genomes]
rs16891668	1.00[EUR][1000 genomes]
rs1816563	1.00[EUR][1000 genomes]
rs1821782	1.00[EUR][1000 genomes]
rs1856929	1.00[EUR][1000 genomes]
rs2050921	1.00[EUR][1000 genomes]
rs2164604	1.00[EUR][1000 genomes]
rs2196559	1.00[EUR][1000 genomes]
rs2322746	1.00[EUR][1000 genomes]
rs2874853	1.00[EUR][1000 genomes]
rs55676897	1.00[EUR][1000 genomes]
rs58695989	1.00[EUR][1000 genomes]
rs58820680	1.00[EUR][1000 genomes]
rs59082997	1.00[EUR][1000 genomes]
rs59127507	1.00[EUR][1000 genomes]
rs60632324	1.00[EUR][1000 genomes]
rs6909840	1.00[EUR][1000 genomes]
rs6911601	1.00[EUR][1000 genomes]
rs6929118	1.00[EUR][1000 genomes]
rs73748778	1.00[EUR][1000 genomes]
rs73748779	1.00[EUR][1000 genomes]
rs7451565	1.00[EUR][1000 genomes]
rs7749943	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80882400-80935400	Weak transcription	Dnd41	blood
2	chr6:80891600-80931200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:80896400-80927400	Weak transcription	Aorta	Aorta
4	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
5	chr6:80905600-80923800	Weak transcription	Small Intestine	intestine
6	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
7	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:80910000-80933400	Weak transcription	Esophagus	oesophagus
9	chr6:80911200-80924200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:80913400-80923200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:80914600-80980400	Weak transcription	Ovary	ovary
13	chr6:80914800-80929000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:80914800-80934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:80914800-80938400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:80914800-80938600	Weak transcription	Liver	Liver
17	chr6:80915400-80938200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
20	chr6:80916800-80930000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:80920800-80929200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:80920800-80943600	Weak transcription	Psoas Muscle	Psoas
23	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:80921000-80923400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:80921200-80923600	Weak transcription	Fetal Stomach	stomach
26	chr6:80921200-80923600	Weak transcription	Gastric	stomach
27	chr6:80921200-80923800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:80921200-80924800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:80921200-80929000	Weak transcription	Left Ventricle	heart
30	chr6:80921200-80940200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:80921200-80940200	Weak transcription	HSMMtube	muscle
32	chr6:80921400-80923600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:80921400-80923600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:80921400-80923600	Weak transcription	HSMM	muscle
35	chr6:80921400-80924400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:80921400-80927200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:80921400-80927200	Weak transcription	NHDF-Ad	bronchial
38	chr6:80921400-80929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
40	chr6:80921600-80924800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:80921600-80938400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:80921800-80923600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:80921800-80923600	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
45	chr6:80922400-80929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:80922600-80923600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:80922600-80930000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:80923000-80923400	Weak transcription	Fetal Heart	heart
49	chr6:80923000-80923400	Weak transcription	Stomach Mucosa	stomach

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