Variant report

Variant	rs6920569
Chromosome Location	chr6:81086011-81086012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1341277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1561180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1595253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2082998	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2322764	0.82[AFR][1000 genomes]
rs2322768	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4706842	0.85[AFR][1000 genomes]
rs56817842	1.00[AMR][1000 genomes]
rs57116637	1.00[AMR][1000 genomes]
rs58029226	1.00[AMR][1000 genomes]
rs6454156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907711	0.82[AFR][1000 genomes]
rs6929118	0.95[YRI][hapmap]
rs7749724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9449064	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv970145	chr6:81079495-81091148	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81078600-81105800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81084200-81101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:81084400-81103200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:81085800-81086200	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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