Variant report

Variant	rs6904553
Chromosome Location	chr6:64051818-64051819
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs56968543	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57150842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57634850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57660366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58220012	1.00[AMR][1000 genomes]
rs58361688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59386094	1.00[AMR][1000 genomes]
rs60235537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61211774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61462691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61687215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907200	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6907351	1.00[AMR][1000 genomes]
rs6909675	1.00[AMR][1000 genomes]
rs6910802	1.00[AMR][1000 genomes]
rs6913699	1.00[AMR][1000 genomes]
rs6914443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925453	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6933071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936106	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6939127	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs73432835	1.00[AMR][1000 genomes]
rs73432842	1.00[AMR][1000 genomes]
rs7745612	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749748	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750053	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750464	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7750495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750847	1.00[AMR][1000 genomes]
rs7751985	1.00[AMR][1000 genomes]
rs7752633	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7764305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765130	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772030	1.00[AMR][1000 genomes]
rs7772187	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7773899	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775614	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9361589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64040400-64071200	Weak transcription	Placenta	Placenta
2	chr6:64050800-64053000	Strong transcription	A549	lung
3	chr6:64051400-64058000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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