Variant report

Variant	rs6905435
Chromosome Location	chr6:12604081-12604082
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:12292316..12293539-chr6:12603121..12604181,5	MCF-7	breast:
2	chr6:12299268..12300891-chr6:12602601..12604468,2	MCF-7	breast:
3	chr6:12287998..12290679-chr6:12603007..12605313,2	MCF-7	breast:
4	chr6:12334684..12338495-chr6:12601701..12604234,4	MCF-7	breast:
5	chr6:12597982..12600181-chr6:12602161..12605027,3	MCF-7	breast:
6	chr6:11585810..11586619-chr6:12603390..12604581,3	K562	blood:
7	chr6:12571834..12574405-chr6:12601309..12604125,2	MCF-7	breast:
8	chr6:12286386..12290571-chr6:12602868..12606130,3	MCF-7	breast:
9	chr6:12292341..12293465-chr6:12603549..12604445,7	MCF-7	breast:
10	chr6:12311089..12311618-chr6:12603780..12604372,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6919482	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6933052	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470801	chr6:12559239-12666093	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv462638	chr6:12569231-12651249	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv600991	chr6:12569231-12651249	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12595800-12608200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:12596800-12606200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:12601000-12604200	Enhancers	HUVEC	blood vessel
4	chr6:12602000-12604400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:12602800-12606200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:12602800-12606200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:12602800-12606400	Weak transcription	Psoas Muscle	Psoas
8	chr6:12603000-12608200	Weak transcription	NH-A	brain
9	chr6:12603200-12606000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:12603400-12605000	Weak transcription	GM12878-XiMat	blood
11	chr6:12603400-12606000	Weak transcription	NHDF-Ad	bronchial
12	chr6:12603400-12608400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:12603600-12606000	Weak transcription	Osteobl	bone
14	chr6:12603600-12606200	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:12603600-12606200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:12603600-12606600	Enhancers	A549	lung
17	chr6:12603600-12607800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:12603600-12608200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:12603800-12605200	Weak transcription	Adipose Nuclei	Adipose
20	chr6:12603800-12606200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:12603800-12606200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:12603800-12606200	Weak transcription	HMEC	breast
23	chr6:12603800-12607200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:12603800-12607400	Weak transcription	NHEK	skin
25	chr6:12603800-12607800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:12603800-12608000	Weak transcription	HSMM	muscle
27	chr6:12603800-12608200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:12603800-12608400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:12603800-12608400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:12603800-12608400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:12603800-12608400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:12603800-12608600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:12604000-12604200	Enhancers	Brain Cingulate Gyrus	brain

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