Variant report

Variant	rs6919482
Chromosome Location	chr6:12606472-12606473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12234096..12234754-chr6:12605862..12606587,2	MCF-7	breast:
2	chr11:118796956..118799852-chr6:12604913..12606838,2	MCF-7	breast:
3	chr6:12148334..12149885-chr6:12606136..12608631,2	K562	blood:
4	chr6:12606093..12606619-chr6:12893847..12894513,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6905435	1.00[CEU][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6933052	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470801	chr6:12559239-12666093	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv462638	chr6:12569231-12651249	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv600991	chr6:12569231-12651249	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12595800-12608200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:12603000-12608200	Weak transcription	NH-A	brain
3	chr6:12603400-12608400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:12603600-12606600	Enhancers	A549	lung
5	chr6:12603600-12607800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:12603600-12608200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:12603800-12607200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:12603800-12607400	Weak transcription	NHEK	skin
9	chr6:12603800-12607800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:12603800-12608000	Weak transcription	HSMM	muscle
11	chr6:12603800-12608200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:12603800-12608400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:12603800-12608400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:12603800-12608400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:12603800-12608400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:12603800-12608600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:12605800-12608400	Enhancers	HUVEC	blood vessel
18	chr6:12606000-12606600	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:12606000-12606600	Enhancers	Liver	Liver
20	chr6:12606000-12606600	Active TSS	Brain Anterior Caudate	brain
21	chr6:12606000-12606600	Enhancers	NHDF-Ad	bronchial
22	chr6:12606000-12606800	Flanking Active TSS	GM12878-XiMat	blood
23	chr6:12606000-12607000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:12606200-12606600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr6:12606200-12606600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:12606200-12606600	Enhancers	Colon Smooth Muscle	Colon
27	chr6:12606200-12606600	Flanking Active TSS	Osteobl	bone
28	chr6:12606200-12606800	Enhancers	HMEC	breast
29	chr6:12606200-12606800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:12606200-12608200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:12606400-12606600	Enhancers	Fetal Heart	heart
32	chr6:12606400-12606600	Active TSS	Psoas Muscle	Psoas
33	chr6:12606400-12608200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:12606400-12608200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:12606400-12610400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links